4A69

Structure of HDAC3 bound to corepressor and inositol tetraphosphate

Structural Biology Knowledgebase: 4A69 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.06 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.187

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4A69

Classification: TRANSCRIPTION

Total Structure Weight: 110226.17

Macromolecule Entities
Molecule Chains Length Organism Details
HISTONE DEACETYLASE 3, A, B 376 Homo sapiens EC#: 3.5.1.98 IUBMB
Fragment: RESIDUES 1-376
Gene Name(s): HDAC3 Gene View
NUCLEAR RECEPTOR COREPRESSOR 2 C, D 94 Homo sapiens Fragment: RESIDUES 389-480
Gene Name(s): NCOR2 Gene View CTG26

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ACT
Query on ACT

A, B ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer
 
JSmol
GOL
Query on GOL

A, B GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
I0P
Query on I0P

C, D D-MYO INOSITOL 1,4,5,6 TETRAKISPHOSPHATE
C6 H16 O18 P4
MRVYFOANPDTYBY-YORTWTKJSA-N
Ligand Explorer
 
JSmol
K
Query on K

A, B POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.06 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.187
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 86.45 α = 90.00
b = 118.63 β = 90.00
c = 190.71 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-11-01
  • Released Date: 2012-01-11
  • Deposition author(s): Watson, P.J., Fairall, L., Santos, G.M., Schwabe, J.W.R.

Revision History

  • 2012-01-25
    Type: Other | Details: Geometry validation, Citation