471D

CRYSTAL STRUCTURE AND IMPROVED ANTISENSE PROPERTIES OF 2'-O-(2-METHOXYETHYL)-RNA

Structural Biology Knowledgebase: 471D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.193

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 471D

Classification: RNA

Total Structure Weight: 9097.25

Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*(C43)P*(G48)P*(C43)P*(G48)P*(A44)P*(A44)P*(U36)P*(U36)P*(C43)P*(G48)P*(C43)P*(G48))-3') A, B 12 synthetic O2* OF EACH RIBOSE MODIFIED BY METHOXYETHYL

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
Modified Residues 4 Unique
ID Chains Type Formula 2D Diagram Parent
C43
Query on C43
A, B RNA LINKING C12 H20 N3 O9 P C
G48
Query on G48
A, B RNA LINKING C13 H20 N5 O9 P G
A44
Query on A44
A, B RNA LINKING C13 H20 N5 O8 P A
U36
Query on U36
A, B RNA LINKING C12 H19 N2 O10 P U

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.193
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 44.06 α = 90.00
b = 35.40 β = 95.00
c = 48.34 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1999-04-29
  • Released Date: 1999-05-12
  • Deposition author(s): Teplova, M., Minasov, G., Tereshko, V., Inamati, G., Cook, P.D., Egli, M.

Revision History

  • 2013-02-27
    Type: Atom nomenclature | Details: --
  • 2013-01-16
    Type: Atom nomenclature | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4