Download MendeleyThe structure of the Ribosomal RNA small subunit methyltransferase A from Burkholderia pseudomallei
Clifton, M.C., Abendroth, J., Sankaran, B., Seattle Structural Genomics Center for Infectious Disease (SSGCID)To be published.
3UZU
The structure of the Ribosomal RNA small subunit methyltransferase A from Burkholderia pseudomallei
- PDB DOI: https://doi.org/10.2210/pdb3UZU/pdb
- Classification: TRANSFERASE
- Organism(s): Burkholderia pseudomallei
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2011-12-07 Released: 2011-12-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.217
- R-Value Work: 0.180
- R-Value Observed: 0.182
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal RNA small subunit methyltransferase A | 279 | Burkholderia pseudomallei | Mutation(s): 0 Gene Names: rsmA, ksgA, BURPS1710b_0874 EC: 2.1.1.182 |  | |
UniProt | |||||
Find proteins for Q63X76 (Burkholderia pseudomallei (strain K96243)) Explore Q63X76 Go to UniProtKB: Q63X76 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q63X76 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | B [auth A], C [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.217
- R-Value Work: 0.180
- R-Value Observed: 0.182
- Space Group: C 1 2 1
- Diffraction Data: https://doi.org/10.18430/M33UZU
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 91.19 | α = 90 |
| b = 49.34 | β = 95.91 |
| c = 61.16 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XSCALE | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
Entry History
Deposition Data
- Released Date: 2011-12-14 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2011-12-14
Type: Initial release - Version 1.1: 2017-10-11
Changes: Data collection - Version 1.2: 2023-09-13
Changes: Data collection, Database references, Derived calculations, Refinement description
