3U3H

X-Ray Crystallographic Analysis of D-Xylose Isomerase-Catalyzed Isomerization of (R)-Glyceraldehyde

Structural Biology Knowledgebase: 3U3H SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.97 Å
  • R-Value Free: 0.125
  • R-Value Work: 0.116

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3U3H

Classification: ISOMERASE

Total Structure Weight: 43604.60

Macromolecule Entities
Molecule Chains Length Organism Details
Xylose isomerase A 388 Streptomyces rubiginosus EC#: 5.3.1.5 IUBMB
Gene Name(s): xylA

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
03W
Query on 03W

A (2R)-propane-1,1,2,3-tetrol
C3 H8 O4
MQVRLONNONYDJP-UWTATZPHSA-N
Ligand Explorer
 
JSmol
FMT
Query on FMT

A FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
MRD
Query on MRD

A (4R)-2-METHYLPENTANE-2,4-DIOL
C6 H14 O2
SVTBMSDMJJWYQN-RXMQYKEDSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.97 Å
  • R-Value Free: 0.125
  • R-Value Work: 0.116
  • Space Group: I 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 92.65 α = 90.00
b = 98.15 β = 90.00
c = 102.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-10-05
  • Released Date: 2011-10-26
  • Deposition author(s): Allen, K.N., Silvaggi, N.R., Toteva, M.M., Richard, J.P.

Revision History

  • 2011-12-07
    Type: Citation | Details: Citation update