Crystal structure of broad and potent HIV-1 neutralizing antibody PGT128 in complex with a glycosylated engineered gp120 outer domain with miniV3 (eODmV3)
3TYG
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Immune System , Viral Protein
    Structure Weight: 72745.75
    Molecule: Envelope glycoprotein gp160
    Polymer: 1 Type: protein Length: 199
    Chains: A
    Organism: HIV-1 unknown group
    Gene Name: env
    UniProtKB: Protein Feature View | Search PDB | P04578  

    UniProtKB: Protein Feature View | Search PDB | Q75760  
    Molecule: PGT128 light chain, Ig lambda-2 chain C regions
    Polymer: 2 Type: protein Length: 211
    Chains: L
    Organism: Homo sapiens
    Gene Name: IGLC2
    UniProtKB: Protein Feature View | Search PDB | P0CG05  
    Molecule: PGT128 heavy chain, Ig gamma-1 chain C region
    Polymer: 3 Type: protein Length: 239
    Chains: H
    Organism: Homo sapiens
    Gene Name: IGHG1
    UniProtKB: Protein Feature View | Search PDB | P01857  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Human immunodeficiency virus 1   Taxonomy   Expression System: Homo sapiens  
    Polymer: 2
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Homo sapiens  
    Polymer: 3
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Homo sapiens  
    Polymer: 4
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 5
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    3TV3   Fab 128 complex with Man9 
    3TWC   Fab 127 complex with Man9 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    BMA
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    BMA C6 H12 O6
    BETA-D-MANNOSE
    MAN
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    MAN C6 H12 O6
    ALPHA-D-MANNOSE
    NAG
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    NAG C8 H15 N O6
    N-ACETYL-D-GLUCOSAMINE
    NAG:3TYG
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    PCA
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    PCA C5 H7 N O3 GLU lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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