Crystal structure of broad and potent HIV-1 neutralizing antibody PGT128 in complex with a glycosylated engineered gp120 outer domain with miniV3 (eODmV3) DOI:10.2210/pdb3tyg/pdb

3TYG   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Immune System , Viral Protein Structure Weight: 72745.75 Molecule: Envelope glycoprotein gp160 Polymer: 1 Type: protein Length: 199 Chains: A Organism HIV-1 unknown group Gene Name env UniProtKB:   Protein Feature View | Search PDB | P04578     UniProtKB:   Protein Feature View | Search PDB | Q75760     Molecule: PGT128 light chain, Ig lambda-2 chain C regions Polymer: 2 Type: protein Length: 211 Chains: L Organism Homo sapiens Molecule: PGT128 heavy chain, Ig gamma-1 chain C region Polymer: 3 Type: protein Length: 239 Chains: H Organism Homo sapiens     Source Hide Polymer: 1 Scientific Name: Human immunodeficiency virus 1   Taxonomy   Expression System: Homo sapiens   Polymer: 2 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Homo sapiens   Polymer: 3 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Homo sapiens   Polymer: 4 Scientific Name: Synthetic construct   Taxonomy     Polymer: 5 Scientific Name: Synthetic construct   Taxonomy         Related PDB Entries Hide Identifier Details 3TV3  Fab 128 complex with Man9  3TWC  Fab 127 complex with Man9      Ligand Chemical Component Hide Identifier Formula Name Interactions BMA Search  Download  C6 H12 O6 BETA-D-MANNOSE   Ligand Explorer MAN Search  Download  C6 H12 O6 ALPHA-D-MANNOSE   Ligand Explorer NAG Search  Download  C8 H15 N O6 N-ACETYL-D-GLUCOSAMINE   Ligand Explorer     Modified Residues Hide Identifier Formula Parent Type PCA Search  C5 H7 N O3 GLU lPeptideLinking     External Domain Annotations Hide Pfam Classification: 12 Domains - data from Pfam       Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Pejchal, R.,  Huang, P.S.,  Schief, W.R.,  Stanfield, R.L.,  Wilson, I.A. Deposition:   2011-09-25 Release:   2011-10-19 Last Modified (REVDAT):   2011-12-07     Revision History    Hide Mouse over text for details 2011-12-07 Citation 2011-10-26 Citation     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors Resolution[Å]:   3.25 R-Value: 0.209 (obs.) R-Free: 0.257 Space Group: P 21 21 21 Unit Cell:   Length [Å] Angles [°] a = 50.79 α = 90.00  b = 73.51 β = 90.00  c = 241.45 γ = 90.00      Molecule of the Month Hide Epidermal Growth Factor Nanobodies Antibodies Hemagglutinin