3T35

Arabidopsis thaliana dynamin-related protein 1A in postfission state

• PDB DOI: https://doi.org/10.2210/pdb3T35/pdb

• Classification: MOTOR PROTEIN
• Organism(s): Arabidopsis thaliana
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2011-07-24 Released: 2012-06-06 
• Deposition Author(s): Yan, L.M., Ma, Y.Y., Sun, Y.N., Lou, Z.Y.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.59 Å
• R-Value Free: 0.291 
• R-Value Work: 0.238 
• R-Value Observed: 0.241 

Literature

Structural basis for mechanochemical role of Arabidopsis thaliana dynamin-related protein in membrane fission

Yan, L.M., Ma, Y.Y., Sun, Y.N., Gao, J., Chen, X., Liu, J., Wang, C., Rao, Z., Lou, Z.Y.

(2011) J Mol Cell Biol 3: 378-381

• PubMed: 22107825 
• DOI: https://doi.org/10.1093/jmcb/mjr032
• Primary Citation of Related Structures:  
  3T34, 3T35

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 161.42 kDa 
• Atom Count: 11,037 
• Modelled Residue Count: 1,356 
• Deposited Residue Count: 1,440 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Dynamin-related protein 1A, LINKER, Dynamin-related protein 1A	A, B, C, D	360	Arabidopsis thaliana	Mutation(s): 0
UniProt
Find proteins for P42697 (Arabidopsis thaliana) Explore P42697  Go to UniProtKB:  P42697

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GDP	E [auth A], F [auth B], G [auth C], H [auth D]	GUANOSINE-5'-DIPHOSPHATE C10 H15 N5 O11 P2 QGWNDRXFNXRZMB-UUOKFMHZSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.59 Å
• R-Value Free: 0.291 
• R-Value Work: 0.238 
• R-Value Observed: 0.241 
• Space Group: P 6₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 146.157	α = 90
b = 146.157	β = 90
c = 204.254	γ = 120

Software Package:

Software Name	Purpose
MAR345dtb	data collection
PHASER	phasing
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2012-06-06 
Deposition Author(s): Yan, L.M., Ma, Y.Y., Sun, Y.N., Lou, Z.Y.

Revision History  

• Version 1.0: 2012-06-06
  Type: Initial release
  
• Version 1.1: 2017-06-28
  Changes: Source and taxonomy
• Version 1.2: 2023-11-01
  Changes: Data collection, Database references, Derived calculations, Refinement description