3S3J

Transglutaminase 2 in complex with a novel inhibitor

Structural Biology Knowledgebase: 3S3J SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.281
  • R-Value Work: 0.214

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3S3J

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 79615.80

Macromolecule Entities
Molecule Chains Length Organism Details
Protein-glutamine gamma-glutamyltransferase 2 A 694 Homo sapiens EC#: 2.3.2.13 IUBMB
Fragment: unp residues 2-687
Gene Name(s): TGM2 Gene View
Peptide inhibitor B 5 Synthetic construct

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000935 (02Y,VAL,PHQ,PRO,LEU) B N-[(benzyloxy)carbonyl]-6-diazonio-5-oxo-L-norleucyl-L-valyl-L-prolyl-L-leucine Peptide-like /
Inhibitor
Ligand Explorer Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.281
  • R-Value Work: 0.214
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 72.47 α = 90.00
b = 72.47 β = 90.00
c = 316.46 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-05-18
  • Released Date: 2012-06-06
  • Deposition author(s): Lindemann, I., Heine, A., Klebe, G.

Revision History

  • 2013-10-16
    Type: Linkage | Details: --
  • 2013-06-26
    Type: Other | Details: added prd annotation