3S3E

Crystal structure of the catalytic domain of PTP10D from Drosophila melanogaster

Structural Biology Knowledgebase: 3S3E SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.205

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3S3E

Classification: HYDROLASE

Total Structure Weight: 72681.06

Macromolecule Entities
Molecule Chains Length Organism Details
Tyrosine-protein phosphatase 10D A, B 307 Drosophila melanogaster EC#: 3.1.3.48 IUBMB
Fragment: UNP residues 1250-1533
Gene Name(s): Ptp10D CG1817

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BU1
Query on BU1

B 1,4-BUTANEDIOL
C4 H10 O2
WERYXYBDKMZEQL-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
1BO
Query on 1BO

A, B 1-BUTANOL
BUTAN-1-OL (Synonym)
C4 H10 O
LRHPLDYGYMQRHN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IPA
Query on IPA

A, B ISOPROPYL ALCOHOL
2-PROPANOL (Synonym)
C3 H8 O
KFZMGEQAYNKOFK-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.205
  • Space Group: P 31 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 102.46 α = 90.00
b = 102.46 β = 90.00
c = 171.84 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-05-18
  • Released Date: 2011-11-02
  • Deposition author(s): Madan, L.L., Gopal, B.

Revision History

  • 2013-07-03
    Type: Citation | Details: Citation update