3S0Z

Crystal structure of New Delhi Metallo-beta-lactamase (NDM-1)

Structural Biology Knowledgebase: 3S0Z SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.234

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3S0Z

Classification: HYDROLASE

Total Structure Weight: 47430.92

Macromolecule Entities
Molecule Chains Length Organism Details
Metallo-beta-lactamase A, B 224 Escherichia coli Fragment: UNP RESIDUES 47-270
Gene Name(s): blaNDM-1 bla NDM-1 AZ95_0035 ECS01_0033 NDM1Dok01_N0175 pNDM102337_147 pNDM10505_149 RR31_25680 RR31_25890

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.234
  • Space Group: P 31
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 40.70 α = 90.00
b = 40.70 β = 90.00
c = 215.29 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-05-13
  • Released Date: 2011-06-01
  • Deposition author(s): Guo, Y., Wang, J., Niu, G.J., Shui, W.Q., Sun, Y.N., Lou, Z.Y., Rao, Z.H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4