3RYY

Fluoroalkyl and Alkyl Chains Have Similar Hydrophobicities in Binding to the Hydrophobic Wall of Carbonic Anhydrase

Structural Biology Knowledgebase: 3RYY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.16 Å
  • R-Value Free: 0.152
  • R-Value Work: 0.124

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3RYY

Classification: LYASE

Total Structure Weight: 29635.94

Macromolecule Entities
Molecule Chains Length Organism Details
Carbonic anhydrase 2 A 259 Homo sapiens EC#: 4.2.1.1 IUBMB
Mutation: K9G
Gene Name(s): CA2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RYY
Query on RYY

A N-propyl-4-sulfamoylbenzamide
C10 H14 N2 O3 S
YWNDDZRHHBUBPB-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
RYY N/A in BindingDB
Kd: 38 nM  BindingMOAD
Kd: 38 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.16 Å
  • R-Value Free: 0.152
  • R-Value Work: 0.124
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 42.39 α = 90.00
b = 41.67 β = 104.52
c = 72.23 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-05-11
  • Released Date: 2011-08-10
  • Deposition author(s): Snyder, P.W., Bai, S., Heroux, A., Whitesides, G.W.

Revision History

  • 2011-11-16
    Type: Citation | Details: Citation update