3RYX

Fluoroalkyl and Alkyl Chains Have Similar Hydrophobicities in Binding to the Hydrophobic Wall of Carbonic Anhydrase

Structural Biology Knowledgebase: 3RYX SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.165

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3RYX

Classification: Lyase

Total Structure Weight: 29555.73

Macromolecule Entities
Molecule Chains Length Organism Details
Carbonic anhydrase 2 B 259 Homo sapiens EC#: 4.2.1.1 IUBMB
Gene Name(s): CA2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RYX
Query on RYX

B N-(2,2,3,3,3-pentafluoropropyl)-4-sulfamoylbenzamide
C10 H9 F5 N2 O3 S
XRWFNUPDTKOWTL-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
RYX N/A in BindingDB
Kd: 7.3 nM  BindingMOAD
Kd: 7.3 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.165
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 42.58 α = 90.00
b = 41.78 β = 103.58
c = 72.35 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-05-11
  • Released Date: 2011-08-10
  • Deposition author(s): Snyder, P.W., Bai, S., Heroux, A., Whitesides, G.W.

Revision History

  • 2011-11-16
    Type: Citation | Details: Citation update