3RCK

Human Cyclophilin D Complexed with a Fragment

Structural Biology Knowledgebase: 3RCK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.26 Å
  • R-Value Free: 0.181
  • R-Value Work: 0.164

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3RCK

Classification: ISOMERASE / ISOMERASE INHIBITOR

Total Structure Weight: 18441.26

Macromolecule Entities
Molecule Chains Length Organism Details
Peptidyl-prolyl cis-trans isomerase F, mitochondrial X 166 Homo sapiens EC#: 5.2.1.8 IUBMB
Fragment: UNP residues 43-207
Mutation: K175I
Gene Name(s): PPIF Gene View CYP3

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1FP
Query on 1FP

X piperazine-1-carbaldehyde
C5 H10 N2 O
MSSDTZLYNMFTKN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.26 Å
  • R-Value Free: 0.181
  • R-Value Work: 0.164
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 57.33 α = 90.00
b = 57.33 β = 90.00
c = 87.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-03-31
  • Released Date: 2012-03-21
  • Deposition author(s): Colliandre, L., Ahmed-Belkacem, H., Bessin, Y., Pawlotsky, J.M., Guichou, J.F.

Revision History

No revisions since initial release