Crystal structure of D-alanine-D-alnine ligase from Xanthomonas oryzae pv. oryzae with ATP DOI:10.2210/pdb3r5f/pdb

3R5F   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Ligase Structure Weight: 42289.49 Molecule: D-alanine--D-alanine ligase 1 Polymer: 1 Type: protein Length: 384 Chains: A EC#: 6.3.2.4    Mutation: M327V Organism Xanthomonas oryzae pv. oryzae KACC 10331 Gene Names ddl XOO0324 UniProtKB:   Protein Feature View | Search PDB | Q2P8P8         Source Hide Polymer: 1 Scientific Name: Xanthomonas oryzae pv. oryzae   Taxonomy   Expression System: Escherichia coli       Ligand Chemical Component Hide Identifier Formula Name Interactions ATP Search  Download  C10 H16 N5 O13 P3 ADENOSINE-5'-TRIPHOSPHATE   Ligand Explorer MG Search  Download  Mg MAGNESIUM ION   Ligand Explorer     External Domain Annotations Hide Pfam Classification: 5 Domains - data from Pfam   GO Terms: 10 Terms - data from GO      Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Doan, T.T.N.,  Kim, J.K.,  Kang, L.W. Deposition:   2011-03-18 Release:   2011-05-25     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   2.07 R-Value: 0.211 (obs.) R-Free: 0.277 Space Group: P 43 21 2 Unit Cell:   Length [Å] Angles [°] a = 83.22 α = 90.00  b = 83.22 β = 90.00  c = 97.14 γ = 90.00