Download MendeleyThe structure of inorganic pyrophosphatase from Thermococcus Thioreducens in complex with magnesium and sulfate
Hughes, R.C., Coates, L., Meehan, E.J., Ng, J.D.To be published.
3Q5V
The structure of inorganic pyrophosphatase from Thermococcus Thioreducens in complex with magnesium and sulfate
- PDB DOI: https://doi.org/10.2210/pdb3Q5V/pdb
- Classification: HYDROLASE
- Organism(s): Thermococcus thioreducens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2010-12-29 Released: 2012-01-04
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.29 Å
- R-Value Free: 0.155
- R-Value Work: 0.120
- R-Value Observed: 0.122
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Tt-IPPase | 178 | Thermococcus thioreducens | Mutation(s): 0 Gene Names: Tt-IPPase |  | |
UniProt | |||||
Find proteins for H2L2L6 (Thermococcus thioreducens) Explore H2L2L6 Go to UniProtKB: H2L2L6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | H2L2L6 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | E [auth A], F [auth A], I [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| MG Query on MG | C [auth A] D [auth A] G [auth A] H [auth B] J [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.29 Å
- R-Value Free: 0.155
- R-Value Work: 0.120
- R-Value Observed: 0.122
- Space Group: H 3 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 114.49 | α = 90 |
| b = 114.49 | β = 90 |
| c = 148.6 | γ = 120 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| MOLREP | phasing |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data collection |
Entry History
Deposition Data
- Released Date: 2012-01-04 Deposition Author(s): Hughes, R.C., Coates, L., Meehan, E.J., Ng, J.D.
Revision History (Full details and data files)
- Version 1.0: 2012-01-04
Type: Initial release - Version 1.1: 2023-09-13
Changes: Data collection, Database references, Derived calculations, Refinement description
