Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome. This file contains the 50S subunit of the first 70S ribosome. DOI:10.2210/pdb3pyo/pdb   NDB ID: NA0927

3PYO   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Split Entry The asymmetric unit for this structure is composed of multiple PDB entries: 3PYN   3PYO   3PYQ   3PYR     Download All Files      Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Ribosome Structure Weight: 1380450.63 Molecule: 23S ribosomal RNA Polymer: 1 Type: rna Length: 2879 Chains: A Organism Thermus thermophilus HB27 Molecule: 5S ribosomal RNA Polymer: 2 Type: rna Length: 119 Chains: B Organism Thermus thermophilus HB27 Molecule: 50S ribosomal protein L2 Polymer: 3 Type: protein Length: 271 Chains: C Organism Thermus thermophilus HB27 Gene Names rplB TT_C1325 UniProtKB:   Protein Feature View | Search PDB | Q72I07     Molecule: 50S ribosomal protein L3 Polymer: 4 Type: protein Length: 204 Chains: D Organism Thermus thermophilus HB27 Gene Names rplC TT_C1328 UniProtKB:   Protein Feature View | Search PDB | Q72I04     Molecule: 50S ribosomal protein L4 Polymer: 5 Type: protein Length: 202 Chains: E Organism Thermus thermophilus HB27 Gene Names rplD TT_C1327 UniProtKB:   Protein Feature View | Search PDB | Q72I05     Molecule: 50S ribosomal protein L5 Polymer: 6 Type: protein Length: 181 Chains: F Organism Thermus thermophilus HB27 Gene Names rplE TT_C1316 UniProtKB:   Protein Feature View | Search PDB | Q72I16     Molecule: 50S ribosomal protein L6 Polymer: 7 Type: protein Length: 159 Chains: G Organism Thermus thermophilus HB27 Gene Names rplF TT_C1313 UniProtKB:   Protein Feature View | Search PDB | Q72I19     Molecule: 50S ribosomal protein L9 Polymer: 8 Type: protein Length: 145 Chains: H Organism Thermus thermophilus HB27 Gene Names rplI TT_C1743 UniProtKB:   Protein Feature View | Search PDB | Q72GV5     Molecule: 50S ribosomal protein L10 Polymer: 9 Type: protein Length: 65 Chains: I Organism Thermus thermophilus HB27 Gene Names rplJ TT_C1777 UniProtKB:   Protein Feature View | Search PDB | Q72GS1     Molecule: 50S ribosomal protein L13 Polymer: 10 Type: protein Length: 137 Chains: J Organism Thermus thermophilus HB27 Gene Names rplM TT_C1101 UniProtKB:   Protein Feature View | Search PDB | Q72IN1     Molecule: 50S ribosomal protein L14 Polymer: 11 Type: protein Length: 122 Chains: K Organism Thermus thermophilus HB27 Gene Names rplN TT_C1318 UniProtKB:   Protein Feature View | Search PDB | Q72I14     Molecule: 50S ribosomal protein L15 Polymer: 12 Type: protein Length: 146 Chains: L Organism Thermus thermophilus HB27 Gene Names rplO TT_C1309 UniProtKB:   Protein Feature View | Search PDB | Q72I23     Molecule: 50S ribosomal protein L16 Polymer: 13 Type: protein Length: 136 Chains: M Organism Thermus thermophilus HB27 Gene Names rplP TT_C1321 UniProtKB:   Protein Feature View | Search PDB | Q72I11     Molecule: 50S ribosomal protein L17 Polymer: 14 Type: protein Length: 117 Chains: N Organism Thermus thermophilus HB27 Gene Names rplQ TT_C1299 UniProtKB:   Protein Feature View | Search PDB | Q72I33     Molecule: 50S ribosomal protein L18 Polymer: 15 Type: protein Length: 98 Chains: O Organism Thermus thermophilus HB27 Gene Names rplR TT_C1312 UniProtKB:   Protein Feature View | Search PDB | Q72I20     Molecule: 50S ribosomal protein L19 Polymer: 16 Type: protein Length: 137 Chains: P Organism Thermus thermophilus HB27 Gene Names rplS TT_C0669 UniProtKB:   Protein Feature View | Search PDB | Q72JU9     Molecule: 50S ribosomal protein L20 Polymer: 17 Type: protein Length: 116 Chains: Q Organism Thermus thermophilus HB27 Gene Names rplT TT_C0185 UniProtKB:   Protein Feature View | Search PDB | Q72L76     Molecule: 50S ribosomal protein L21 Polymer: 18 Type: protein Length: 101 Chains: R Organism Thermus thermophilus HB27 Gene Names rplU TT_C1424 UniProtKB:   Protein Feature View | Search PDB | Q72HR2     Molecule: 50S ribosomal protein L22 Polymer: 19 Type: protein Length: 112 Chains: S Organism Thermus thermophilus HB27 Gene Names rplV TT_C1323 UniProtKB:   Protein Feature View | Search PDB | Q72I09     Molecule: 50S ribosomal protein L23 Polymer: 20 Type: protein Length: 92 Chains: T Organism Thermus thermophilus HB27 Gene Names rplW TT_C1326 UniProtKB:   Protein Feature View | Search PDB | Q72I06     Molecule: 50S ribosomal protein L24 Polymer: 21 Type: protein Length: 100 Chains: U Organism Thermus thermophilus HB27 Gene Names rplX TT_C1317 UniProtKB:   Protein Feature View | Search PDB | Q72I15     Molecule: 50S ribosomal protein L25 Polymer: 22 Type: protein Length: 188 Chains: V Organism Thermus thermophilus HB27 Gene Names rplY ctc TT_C1225 UniProtKB:   Protein Feature View | Search PDB | Q72IA7     Molecule: 50S ribosomal protein L27 Polymer: 23 Type: protein Length: 76 Chains: W Organism Thermus thermophilus HB27 Gene Names rpmA TT_C1423 UniProtKB:   Protein Feature View | Search PDB | Q72HR3     Molecule: 50S ribosomal protein L28 Polymer: 24 Type: protein Length: 88 Chains: X Organism Thermus thermophilus HB27 Gene Names rpmB TT_C1964 UniProtKB:   Protein Feature View | Search PDB | Q72G84     Molecule: 50S ribosomal protein L29 Polymer: 25 Type: protein Length: 62 Chains: Y Organism Thermus thermophilus HB27 Gene Names rpmC TT_C1320 UniProtKB:   Protein Feature View | Search PDB | Q72I12     Molecule: 50S ribosomal protein L30 Polymer: 26 Type: protein Length: 59 Chains: Z Organism Thermus thermophilus HB27 Gene Names rpmD TT_C1310 UniProtKB:   Protein Feature View | Search PDB | Q72I22     Molecule: 50S ribosomal protein L31 Polymer: 27 Type: protein Length: 30 Chains: 1 Organism Thermus thermophilus HB27 Gene Names rpmE TT_C0708 UniProtKB:   Protein Feature View | Search PDB | Q72JR0     Molecule: 50S ribosomal protein L32 Polymer: 28 Type: protein Length: 52 Chains: 2 Organism Thermus thermophilus HB27 Gene Names rpmF rpl32 TT_C0050 UniProtKB:   Protein Feature View | Search PDB | P62652     Molecule: 50S ribosomal protein L33 Polymer: 29 Type: protein Length: 44 Chains: 3 Organism Thermus thermophilus HB27 Gene Names rpmG TT_C1735 UniProtKB:   Protein Feature View | Search PDB | Q72GW3     Molecule: 50S ribosomal protein L34 Polymer: 30 Type: protein Length: 48 Chains: 4 Organism Thermus thermophilus HB27 Gene Names rpmH rpl34 TTHA0446 UniProtKB:   Protein Feature View | Search PDB | P80340     Molecule: 50S ribosomal protein L35 Polymer: 31 Type: protein Length: 63 Chains: 5 Organism Thermus thermophilus HB27 Gene Names rpmI TT_C0184 UniProtKB:   Protein Feature View | Search PDB | Q72L77         Source Hide Polymer: 1 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 2 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 3 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 4 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 5 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 6 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 7 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 8 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 9 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 10 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 11 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 12 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 13 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 14 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 15 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 16 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 17 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 18 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 19 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 20 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 21 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 22 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 23 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 24 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 25 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 26 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 27 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 28 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 29 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 30 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 31 Scientific Name: Thermus thermophilus   Taxonomy         Related PDB Entries Hide Identifier Details 3PYN  30S subunit of 70S Ribosome 1  3PYQ  30S subunit of 70S Ribosome 2  3PYR  50S subunit of 70S Ribosome 2  3PYS  30S subunit of 70S Ribosome 1  3PYT  50S subunit of 70S Ribosome 1  3PYU  30S subunit of 70S Ribosome 2  3PYV  50S subunit of 70S Ribosome 2      Ligand Chemical Component Hide Identifier Formula Name Interactions MG Search  Download  Mg MAGNESIUM ION   Ligand Explorer     External Domain Annotations Hide Pfam Classification: 32 Domains - data from Pfam   GO Terms: 185 Terms - data from GO      Structural Biology Knowledgebase Data Hide   Nucleic Acid Database Hide View the NDB ID associated with this structure: NA0927     Data in orange boxes are gathered from external resources (when available). 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Biological Assembly            View in 3D More Images... Composite of PDB entries (3PYN and 3PYO)         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Zhu, J.,  Korostelev, A.,  Costantino, D.,  Noller, H.F.,  Kieft, J.S. Deposition:   2010-12-13 Release:   2011-02-09 Last Modified (REVDAT):   2011-02-16     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors Resolution[Å]:   3.50 R-Value: 0.233 (obs.) R-Free: 0.264 Space Group: P 21 21 21 Unit Cell:   Length [Å] Angles [°] a = 211.94 α = 90.00  b = 455.59 β = 90.00  c = 618.02 γ = 90.00      Molecule of the Month Hide Ribosome Transfer-Messenger RNA