3P9K

Crystal structure of perennial ryegrass LpOMT1 complexed with S-adenosyl-L-homocysteine and coniferaldehyde

Structural Biology Knowledgebase: 3P9K SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.232

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3P9K

Classification: TRANSFERASE

Total Structure Weight: 158838.66

Macromolecule Entities
Molecule Chains Length Organism Details
Caffeic acid O-methyltransferase A, B, C, D 364 Lolium perenne EC#: 2.1.1.6 IUBMB
Gene Name(s): OMT1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SAH
Query on SAH

A, B, C, D S-ADENOSYL-L-HOMOCYSTEINE
C14 H20 N6 O5 S
ZJUKTBDSGOFHSH-WFMPWKQPSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CIY
Query on CIY

A, B, C, D (2E)-3-(4-hydroxy-3-methoxyphenyl)prop-2- enal
Coniferaldehyde (Synonym)
C10 H10 O3
DKZBBWMURDFHNE-NSCUHMNNSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.232
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 95.38 α = 90.00
b = 85.06 β = 111.75
c = 98.59 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-10-17
  • Released Date: 2011-01-12
  • Deposition author(s): Louie, G.V., Noel, J.P., Bowman, M.E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4