3P58

Human Carbonic Anhydrase in complex with Benzyl (Methyl) Carbamodithoic Acid

Structural Biology Knowledgebase: 3P58 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.49 Å
  • R-Value Free: 0.171
  • R-Value Work: 0.150

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3P58

Classification: lyase / inhibitor

Total Structure Weight: 29551.99

Macromolecule Entities
Molecule Chains Length Organism Details
Carbonic anhydrase 2 A 260 Homo sapiens EC#: 4.2.1.1 IUBMB
Gene Name(s): CA2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
P58
Query on P58

A benzyl(methyl)carbamodithioic acid
C9 H11 N S2
KVRJHAJGPHILSK-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
P58 Ki: 25 nM (100) BindingDB

Ki: 25.4 nM  BindingMOAD
Ki: 25.4 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.49 Å
  • R-Value Free: 0.171
  • R-Value Work: 0.150
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 42.23 α = 90.00
b = 41.13 β = 104.39
c = 71.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-10-08
  • Released Date: 2011-10-19
  • Deposition author(s): Aggarwal, M., McKenna, R.

Revision History

  • 2012-01-25
    Type: Citation | Details: Citation update