3OZR

Rat catechol O-methyltransferase in complex with a catechol-type, bisubstrate inhibitor, no substituent in the adenine site - humanized form

Structural Biology Knowledgebase: 3OZR SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.73 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.194

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3OZR

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 25094.52

Macromolecule Entities
Molecule Chains Length Organism Details
Catechol O-methyltransferase A 221 Rattus norvegicus EC#: 2.1.1.6 IUBMB
Fragment: SOLUBLE FORM, UNP RESIDUES 44-264
Mutation: M91I, Y95C
Gene Name(s): Comt

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
OZR
Query on OZR

A N-[(E)-3-[(2R,3S,4S)-3,4-dihydroxyoxolan- 2-yl]prop-2-enyl]-2,3-dihydroxy-5-nitro-benzamide
C14 H16 N2 O8
VDHNUEGZSFACAM-CNBGNIIQSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
OZR N/A in BindingDB
IC50: 31600 nM  BindingMOAD
Ki: 7022 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.73 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.194
  • Space Group: P 32 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 50.53 α = 90.00
b = 50.53 β = 90.00
c = 167.72 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-09-27
  • Released Date: 2011-03-16
  • Deposition author(s): Ehler, A., Schlatter, D., Stihle, M., Benz, J., Rudolph, M.G.

Revision History

  • 2012-08-15
    Type: Entry title | Details: --
  • 2012-05-23
    Type: Entry authorship | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4