3OW4

Discovery of dihydrothieno- and dihydrofuropyrimidines as potent pan Akt inhibitors


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.193

Literature

Macromolecules
Sequence Display for 3OW4

Classification: TRANSFERASE / TRANSFERASE inhibitor

Total Structure Weight: 82025.47

Macromolecule Entities
Molecule Chains Length Organism Details
RAC-alpha serine/threonine-protein kinase A, B 341 Homo sapiens EC#: 2.7.11.1 IUBMB
Mutation: S473D, G478S
Gene Name(s): AKT1 Gene View PKB RAC
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
GSK 3 beta peptide C, D 10 Homo sapiens EC#: 2.7.11.26 IUBMB
Gene Name(s): GSK3B Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SMY
Query on SMY

A, B (2R)-3-(1H-indol-3-yl)-1-{4-[(5S)-5-methyl- 5,7-dihydrothieno[3,4-d]pyrimidin-4-yl]piperazin- 1-yl}-1-oxopropan-2-amine
C22 H26 N6 O S
JGLUXTFIRPYAQV-WMLDXEAASA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
SMY IC50: 22 - 3629 nM (99) BindingDB

N/A in BindingMoad
IC50: 22 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
TPO
Query on TPO
A, B L-PEPTIDE LINKING C4 H10 N O6 P THR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.193
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 86.43 α = 90.00
b = 55.82 β = 103.93
c = 91.35 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-09-17
  • Released Date: 2010-11-10
  • Deposition author(s): Dizon, F., Wu, W., Vigers, G.P.A., Brandhuber, B.J.

Revision History

  • Version 1_0: 2010-11-10

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance