Structural-based rational mutagenesis of xylanases from G.stearothermophilus
Solomon, V., Zolotnitsky, G., Feinberg, H., Tabachnikov, O., Shoham, Y., Shoham, G.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Endo-1,4-beta-xylanase | 379 | Geobacillus stearothermophilus | Mutation(s): 1  Gene Names: xynA EC: 3.2.1.8 | ||
UniProt | |||||
Find proteins for P40943 (Geobacillus stearothermophilus) Explore P40943  Go to UniProtKB:  P40943 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P40943 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN Query on ZN | D [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
CL Query on CL | H [auth A], I [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | |||
NA Query on NA | E [auth A], F [auth A], G [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Entity ID: 2 | |||||
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ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_900116 Query on PRD_900116 | B | 4beta-beta-xylobiose | Oligosaccharide / Metabolism |
Entity ID: 3 | |||||
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ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_900117 Query on PRD_900117 | C | 4beta-beta-xylotriose | Oligosaccharide / Metabolism |
Length ( Å ) | Angle ( ˚ ) |
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a = 123.241 | α = 90 |
b = 61.856 | β = 119.2 |
c = 89.066 | γ = 90 |
Software Name | Purpose |
---|---|
HKL-2000 | data collection |
CNS | refinement |
DENZO | data reduction |
SCALEPACK | data scaling |
CNS | phasing |