3L3V

Structure of HIV-1 integrase core domain in complex with sucrose

Structural Biology Knowledgebase: 3L3V SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.194

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3L3V

Classification: VIRAL PROTEIN

Total Structure Weight: 36588.66

Macromolecule Entities
Molecule Chains Length Organism Details
POL polyprotein A, B 163 Human immunodeficiency virus 1 Fragment: CATALYTIC CORE DOMAIN OF integrase, UNP residues 765-927
Mutation: C56S, W131D, F139D, F185H
Gene Name(s): pol

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SUC
Query on SUC

A SUCROSE
C12 H22 O11
CZMRCDWAGMRECN-UGDNZRGBSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CD
Query on CD

A, B CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.194
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 60.08 α = 90.00
b = 60.71 β = 90.00
c = 81.46 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-12-18
  • Released Date: 2010-03-31
  • Deposition author(s): Wielens, J., Chalmers, D.K., Scanlon, M.J., Parker, M.W.

Revision History

  • 2014-02-12
    Type: Citation | Details: Citation update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4