Download MendeleyCrystal structure of NMB1025, a member of YjgF protein family, from Neisseria meningitidis
Ren, J., Sainsbury, S., Owens, R.J.To be published.
3KJK
Crystal structure of NMB1025, a member of YjgF protein family, from Neisseria meningitidis (monoclinic crystal form)
- PDB DOI: https://doi.org/10.2210/pdb3KJK/pdb
- Classification: UNKNOWN FUNCTION
- Organism(s): Neisseria meningitidis serogroup B
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-11-03 Released: 2009-11-24
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.29 Å
- R-Value Free: 0.259
- R-Value Work: 0.221
- R-Value Observed: 0.223
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| NMB1025 protein | 128 | Neisseria meningitidis serogroup B | Mutation(s): 0 Gene Names: NMB1025 |  | |
UniProt | |||||
Find proteins for Q9JZJ4 (Neisseria meningitidis serogroup B (strain MC58)) Explore Q9JZJ4 Go to UniProtKB: Q9JZJ4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9JZJ4 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.29 Å
- R-Value Free: 0.259
- R-Value Work: 0.221
- R-Value Observed: 0.223
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 117.032 | α = 90 |
| b = 78.275 | β = 103.62 |
| c = 181.871 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MOLREP | phasing |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2009-11-24 Deposition Author(s): Ren, J., Sainsbury, S., Owens, R.J., Oxford Protein Production Facility (OPPF)
Revision History (Full details and data files)
- Version 1.0: 2009-11-24
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Refinement description, Version format compliance - Version 1.2: 2023-09-06
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.3: 2023-11-22
Changes: Data collection
