3K42

Crystal structure of sCD-MPR mutant E19Q/K137M pH 7.0


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.228

Literature

Macromolecules
Sequence Display for 3K42

Classification: protein transport sugar binding protein

Total Structure Weight: 36444.29

Macromolecule Entities
Molecule Chains Length Organism Details
Cation-dependent mannose-6-phosphate receptor A, B 154 Bos taurus Fragment: UNP residues 29-182
Mutation: E19Q, N31Q, N57Q, N68Q, N87Q, K137M
Gene Name(s): M6PR Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
1GP
Query on 1GP

A, B SN-GLYCEROL-1-PHOSPHATE
C3 H9 O6 P
AWUCVROLDVIAJX-VKHMYHEASA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.228
  • Space Group: I 4

Unit Cell:

Length (Å) Angle (°)
a = 102.58 α = 90.00
b = 102.58 β = 90.00
c = 100.14 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-10-05
  • Released Date: 2009-11-24
  • Deposition author(s): Olson, L.J., Sun, G., Bohnsack, R.N., Peterson, F.C., Dahms, N.M., Kim, J.J.P.

Revision History

  • Version 1_0: 2009-11-24

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Non-polymer description, Version format compliance

  • Version 1_2: 2017-11-01

    Type: Refinement description