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Localization of the large subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
3IZS
ENTRY 3IZS SUPERSEDES 3IZC
Split Entry
The asymmetric unit for this structure is composed of multiple PDB entries:
3IZB   3IZE   3IZF   3IZS  
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The complete entry has been assigned PDB ID 4V6I and is available for download in PDBx/mmCIF and PDBML/XML formats from the FTP archive at:
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/mmCIF/4v6i.cif.gz
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/XML/4v6i.xml.gz
 
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ribosome
    Structure Weight: 848751.16
    Molecule: 60S ribosomal protein rpL1 (L1p)
    Polymer: 1 Type: protein Length: 217
    Chains: A
    Organism Saccharomyces cerevisiae
    Gene Names RPL1A SSM1 SSM1A YPL220W
    UniProtKB:   Protein Feature View | Search PDB | P0CX43  
    Molecule: 60S ribosomal protein rpL2 (L2p)
    Polymer: 2 Type: protein Length: 254
    Chains: B
    Organism Saccharomyces cerevisiae
    Gene Names RPL2A RPL5B YFR031C-A YFR031BC
    UniProtKB:   Protein Feature View | Search PDB | P0CX45  
    Molecule: 60S ribosomal protein rpL3 (L3p)
    Polymer: 3 Type: protein Length: 388
    Chains: C
    Organism Saccharomyces cerevisiae
    Gene Names RPL3 MAK8 TCM1 YOR063W YOR29-14
    UniProtKB:   Protein Feature View | Search PDB | P14126  
    Molecule: 60S ribosomal protein rpL4 (L4p)
    Polymer: 4 Type: protein Length: 362
    Chains: D
    Organism Saccharomyces cerevisiae
    Molecule: 60S ribosomal protein rpL11 (L5p)
    Polymer: 5 Type: protein Length: 174
    Chains: E
    Organism Saccharomyces cerevisiae
    Gene Names RPL11A RP39A RPL16A YPR102C P8283.14
    UniProtKB:   Protein Feature View | Search PDB | P0C0W9  
    Molecule: 60S ribosomal protein rpL6 (L6e)
    Polymer: 6 Type: protein Length: 176
    Chains: G
    Organism Saccharomyces cerevisiae
    Gene Names RPL6A RPL17A YL16A YML073C
    UniProtKB:   Protein Feature View | Search PDB | Q02326  
    Molecule: 60S ribosomal protein rpL9 (L6p)
    Polymer: 7 Type: protein Length: 191
    Chains: F
    Organism Saccharomyces cerevisiae
    Gene Names RPL9A RPL8A RPL9 YGL147C
    UniProtKB:   Protein Feature View | Search PDB | P05738  
    Molecule: 60S ribosomal protein rpL8 (L7ae)
    Polymer: 8 Type: protein Length: 256
    Chains: H
    Organism Saccharomyces cerevisiae
    Gene Names RPL8A MAK7 RPL4A YHL033C
    UniProtKB:   Protein Feature View | Search PDB | P17076  
    Molecule: 60S acidic ribosomal protein rpP0 (L10P)
    Polymer: 9 Type: protein Length: 312
    Chains: s
    Organism Saccharomyces cerevisiae
    Gene Names RPP0 L10E RPA0 RPL10E RPLA0 YLR340W L8300.8
    UniProtKB:   Protein Feature View | Search PDB | P05317  
    Molecule: 60S ribosomal protein rpL12 (L11p)
    Polymer: 10 Type: protein Length: 165
    Chains: J
    Organism Saccharomyces cerevisiae
    Gene Names RPL12A RPL15B YEL054C
    UniProtKB:   Protein Feature View | Search PDB | P0CX53  
    Molecule: 60S ribosomal protein rpL16 (L13p)
    Polymer: 11 Type: protein Length: 199
    Chains: K
    Organism Saccharomyces cerevisiae
    Gene Names RPL16A RPL13 RPL21A YIL133C
    UniProtKB:   Protein Feature View | Search PDB | P26784  
    Molecule: 60S ribosomal protein rpL14 (L14e)
    Polymer: 12 Type: protein Length: 138
    Chains: N
    Organism Saccharomyces cerevisiae
    Gene Names RPL14A YKL006W YKL153
    UniProtKB:   Protein Feature View | Search PDB | P36105  
    Molecule: 60S ribosomal protein rpL23 (L14p)
    Polymer: 13 Type: protein Length: 137
    Chains: M
    Organism Saccharomyces cerevisiae
    Gene Names RPL23A RPL17A RPL17AA YBL087C YBL0713
    UniProtKB:   Protein Feature View | Search PDB | P0CX41  
    Molecule: 60S ribosomal protein rpL15 (L15e)
    Polymer: 14 Type: protein Length: 204
    Chains: P
    Organism Saccharomyces cerevisiae
    Gene Names RPL15A RPL10A RPL13A YL10A YLR029C
    UniProtKB:   Protein Feature View | Search PDB | P05748  
    Molecule: 60S ribosomal protein rpL28 (L15p)
    Polymer: 15 Type: protein Length: 149
    Chains: O
    Organism Saccharomyces cerevisiae
    Gene Names RPL28 CYH2 YGL103W
    UniProtKB:   Protein Feature View | Search PDB | P02406  
    Molecule: 60S ribosomal protein rpL18 (L18e)
    Polymer: 16 Type: protein Length: 186
    Chains: R
    Organism Saccharomyces cerevisiae
    Gene Names RPL18A RP28A YOL120C
    UniProtKB:   Protein Feature View | Search PDB | P0CX49  
    Molecule: 60S ribosomal protein rpL19 (L19e)
    Polymer: 17 Type: protein Length: 189
    Chains: T
    Organism Saccharomyces cerevisiae
    Gene Names RPL19A RPL23A YL14A YBR084C-A YBR084BC
    UniProtKB:   Protein Feature View | Search PDB | P0CX82  
    Molecule: 60S ribosomal protein rpL21 (L21e)
    Polymer: 18 Type: protein Length: 160
    Chains: U
    Organism Saccharomyces cerevisiae
    Gene Names RPL21A URP1 YBR191W YBR1401
    UniProtKB:   Protein Feature View | Search PDB | Q02753  
    Molecule: 60S ribosomal protein rpL22 (L22e)
    Polymer: 19 Type: protein Length: 121
    Chains: W
    Organism Saccharomyces cerevisiae
    Gene Names RPL22A YLR061W L2168
    UniProtKB:   Protein Feature View | Search PDB | P05749  
    Molecule: 60S ribosomal protein rpL17 (L22p)
    Polymer: 20 Type: protein Length: 170
    Chains: V
    Organism Saccharomyces cerevisiae
    Gene Names RPL17A RPL17 RPL20A YKL180W
    UniProtKB:   Protein Feature View | Search PDB | P05740  
    Molecule: 60S ribosomal protein rpL25 (L23p)
    Polymer: 21 Type: protein Length: 142
    Chains: X
    Organism Saccharomyces cerevisiae
    Gene Names RPL25 YOL127W
    UniProtKB:   Protein Feature View | Search PDB | P04456  
    Molecule: 60S ribosomal protein rpL24 (L24e)
    Polymer: 22 Type: protein Length: 155
    Chains: Z
    Organism Saccharomyces cerevisiae
    Gene Names RPL24A RP29 RPL30A YGL031C
    UniProtKB:   Protein Feature View | Search PDB | P04449  
    Molecule: 60S ribosomal protein rpL26 (L24p)
    Polymer: 23 Type: protein Length: 123
    Chains: Y
    Organism Saccharomyces cerevisiae
    Gene Names RPL26A RPL26 RPL33A YLR344W L8300.4
    UniProtKB:   Protein Feature View | Search PDB | P05743  
    Molecule: 60S ribosomal protein rpL27 (L27e)
    Polymer: 24 Type: protein Length: 136
    Chains: a
    Organism Saccharomyces cerevisiae
    Gene Names RPL27A RPL27 YHR010W
    UniProtKB:   Protein Feature View | Search PDB | P0C2H6  
    Molecule: 60S ribosomal protein rpL29 (L29e)
    Polymer: 25 Type: protein Length: 59
    Chains: d
    Organism Saccharomyces cerevisiae
    Gene Names RPL29 YL43 YFR032C-A YFR032BW
    UniProtKB:   Protein Feature View | Search PDB | P05747  
    Molecule: 60S ribosomal protein rpL35 (L29p)
    Polymer: 26 Type: protein Length: 120
    Chains: c
    Organism Saccharomyces cerevisiae
    Gene Names RPL35A SOS1 YDL191W D1249
    UniProtKB:   Protein Feature View | Search PDB | P0CX84  
    Molecule: 60S ribosomal protein rpL30 (L30e)
    Polymer: 27 Type: protein Length: 105
    Chains: f
    Organism Saccharomyces cerevisiae
    Gene Names RPL30 RPL32 YGL030W
    UniProtKB:   Protein Feature View | Search PDB | P14120  
    Molecule: 60S ribosomal protein rpL7 (L30p)
    Polymer: 28 Type: protein Length: 244
    Chains: e
    Organism Saccharomyces cerevisiae
    Gene Names RPL7A RPL6A RPL8A YL8A YGL076C
    UniProtKB:   Protein Feature View | Search PDB | P05737  
    Molecule: 60S ribosomal protein rpL31 (L31e)
    Polymer: 29 Type: protein Length: 113
    Chains: g
    Organism Saccharomyces cerevisiae
    Gene Names RPL31A RPL34 RPL34A YDL075W D2478
    UniProtKB:   Protein Feature View | Search PDB | P0C2H8  
    Molecule: 60S ribosomal protein pL32 (L32e)
    Polymer: 30 Type: protein Length: 130
    Chains: h
    Organism Saccharomyces cerevisiae
    Gene Names RPL32 YBL092W YBL0838
    UniProtKB:   Protein Feature View | Search PDB | P38061  
    Molecule: 60S ribosomal protein rpL34 (L34e)
    Polymer: 31 Type: protein Length: 118
    Chains: i
    Organism Saccharomyces cerevisiae
    Gene Names RPL34A YER056C-A YER056BC
    UniProtKB:   Protein Feature View | Search PDB | P87262  
    Molecule: 60S ribosomal protein rpL33 (L35ae)
    Polymer: 32 Type: protein Length: 107
    Chains: j
    Organism Saccharomyces cerevisiae
    Gene Names RPL33A RPL37A YPL143W LPI4W P2625
    UniProtKB:   Protein Feature View | Search PDB | P05744  
    Molecule: 60S ribosomal protein rpL36 (L36e)
    Polymer: 33 Type: protein Length: 100
    Chains: k
    Organism Saccharomyces cerevisiae
    Gene Names RPL36A RPL39A YMR194W YM9646.06
    UniProtKB:   Protein Feature View | Search PDB | P05745  
    Molecule: 60S ribosomal protein rpL43 (L37ae)
    Polymer: 34 Type: protein Length: 92
    Chains: m
    Organism Saccharomyces cerevisiae
    Gene Names RPL43A YPR043W YP9499.02
    UniProtKB:   Protein Feature View | Search PDB | P0CX25  
    Molecule: 60S ribosomal protein rpL37 (L37e)
    Polymer: 35 Type: protein Length: 88
    Chains: l
    Organism Saccharomyces cerevisiae
    Gene Names RPL37A RPL35A YLR185W L9470.6
    UniProtKB:   Protein Feature View | Search PDB | P49166  
    Molecule: 60S ribosomal protein rpL38 (L38e)
    Polymer: 36 Type: protein Length: 78
    Chains: n
    Organism Saccharomyces cerevisiae
    Gene Names RPL38 YLR325C L8543.2
    UniProtKB:   Protein Feature View | Search PDB | P49167  
    Molecule: 60S ribosomal protein rpL39 (L39e)
    Polymer: 37 Type: protein Length: 51
    Chains: o
    Organism Saccharomyces cerevisiae
    Gene Names RPL39 RPL46 SPB2 YJL189W J0360
    UniProtKB:   Protein Feature View | Search PDB | P04650  
    Molecule: 60S ribosomal protein rpL40 (L40e)
    Polymer: 38 Type: protein Length: 52
    Chains: p
    Organism Saccharomyces cerevisiae
    Gene Names RPL40A UBI1 YIL148W
    UniProtKB:   Protein Feature View | Search PDB | P0CH08  
    Molecule: 60S ribosomal protein rpL41 (L41e)
    Polymer: 39 Type: protein Length: 25
    Chains: q
    Organism Saccharomyces cerevisiae
    Gene Names RPL41A RPL47A YL41A YDL184C D1290
    UniProtKB:   Protein Feature View | Search PDB | P0CX86  
    Molecule: 60S ribosomal protein rpL42 (L44e)
    Polymer: 40 Type: protein Length: 106
    Chains: r
    Organism Saccharomyces cerevisiae
    Gene Names RPL42A RPL41A SCL41A YNL162W N1722
    UniProtKB:   Protein Feature View | Search PDB | P0CX27  
    Molecule: Unknown protein
    Polymer: 41 Type: protein Length: 21
    Chains: x, y
    Organism Saccharomyces cerevisiae
    Molecule: Unknown protein
    Polymer: 42 Type: protein Length: 15
    Chains: z
    Organism Saccharomyces cerevisiae
    Molecule: 60S acidic ribosomal protein rpP11 (P1)
    Polymer: 43 Type: protein Length: 106
    Chains: t, u
    Organism Saccharomyces cerevisiae
    Gene Names RPP1A L12EIIA RPA1 RPLA1 YDL081C
    UniProtKB:   Protein Feature View | Search PDB | P05318  
    Molecule: 60S acidic ribosomal protein (P2)
    Polymer: 44 Type: protein Length: 106
    Chains: v, w
    Organism Saccharomyces cerevisiae
    Gene Names RPP2A L12EIB RPA2 RPL44 RPLA2 YOL039W
    UniProtKB:   Protein Feature View | Search PDB | P05319  
    Molecule: 60S ribosomal protein rpL5 (L18p)
    Polymer: 45 Type: protein Length: 297
    Chains: Q
    Organism Saccharomyces cerevisiae
    Gene Names RPL5 RPL1 RPL1A YPL131W LPI14W
    UniProtKB:   Protein Feature View | Search PDB | P26321  
    Molecule: 60S ribosomal protein rpL13 (L13e)
    Polymer: 46 Type: protein Length: 170
    Chains: L
    Organism Saccharomyces cerevisiae
    Molecule: 60S ribosomal protein rpL20 (L18ae)
    Polymer: 47 Type: protein Length: 167
    Chains: S
    Organism Saccharomyces cerevisiae
    Gene Names Os01g0752300 OsJ_03475
    UniProtKB:   Protein Feature View | Search PDB | Q0JJA0  
    Molecule: 60S ribosomal protein rpL10 (L10e)
    Polymer: 48 Type: protein Length: 221
    Chains: I
    Organism Saccharomyces cerevisiae
    Gene Names RPL10 GRC5 QSR1 YLR075W
    UniProtKB:   Protein Feature View | Search PDB | P41805  
     
  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 2
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 3
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 4
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 5
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 6
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 7
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 8
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 9
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 10
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 11
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 12
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 13
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 14
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 15
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 16
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 17
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 18
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 19
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 20
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 21
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 22
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 23
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 24
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 25
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 26
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 27
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 28
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 29
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 30
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 31
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 32
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 33
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 34
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 35
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 36
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 37
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 38
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 39
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 40
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 41
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 42
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 43
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 44
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 45
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 46
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 47
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
    Polymer: 48
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast  
     
  •   Related PDB Entries Hide
    Identifier Details
    3IZ5   
    3IZ6   
    3IZ7   
    3IZ9   
    3IZD   
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    UNK
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    UNK C4 H9 N O2 lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Composite of PDB entries 3IZB, 3IZS, 3IZE, 3IZF with symmetry transformations applied