3IKD

Structure-Based Design of Novel PIN1 Inhibitors (I)

Structural Biology Knowledgebase: 3IKD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.203

Literature

Macromolecules
Sequence Display for 3IKD

Classification: ISOMERASE

Total Structure Weight: 28103.33

Macromolecule Entities
Molecule Chains Length Organism Details
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 A, B 123 Homo sapiens EC#: 5.2.1.8 IUBMB
Fragment: UNP residues 45-163, PIN1 PPIASE DOMAIN
Mutation: K77Q, K82Q
Gene Name(s): PIN1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
J9Z
Query on J9Z

A, B (2R)-2-[(1-benzothiophen-2-ylcarbonyl)amino]- 3-phenylpropyl phosphate
C18 H16 N O5 P S
SXNKHSLGMRZBAC-OAHLLOKOSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
J9Z IC50: 180 nM (98) BindingDB
Ki: 179 nM (98) BindingDB

N/A in BindingMoad
Ki: 179 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.203
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 117.35 α = 90.00
b = 36.03 β = 100.30
c = 51.28 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-08-05
  • Released Date: 2009-09-22
  • Deposition author(s): Matthews, D., Greasley, S., Ferre, R., Parge, H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4