Crystal structure of HIV-gp120 core in complex with CD4-binding site antibody b13, space group C222 DOI:10.2210/pdb3idx/pdb

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Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Immune System Structure Weight: 88069.79 Molecule: HIV-1 HxBc2 gp120 core Polymer: 1 Type: protein Length: 317 Chains: G Mutation: M95W, T257S, S375W, A443M, W96C, V275C, I109C, Q428C Organism Human immunodeficiency virus 1 Gene Name env UniProtKB:   Protein Feature View | Search PDB | P04578     Molecule: Fab b13 heavy chain Polymer: 2 Type: protein Length: 231 Chains: H Organism Homo sapiens Molecule: Fab b13 light chain Polymer: 3 Type: protein Length: 215 Chains: L Organism Homo sapiens     Source Hide Polymer: 1 Scientific Name: Human immunodeficiency virus 1   Taxonomy   Expression System: Homo sapiens   Polymer: 2 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Homo sapiens   Polymer: 3 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Homo sapiens       Related PDB Entries Hide Identifier Details 3IDY  Crystal structure of HIV-gp120 core in complex with CD4-binding site antibody b13, in space group C2221      Ligand Chemical Component Hide Identifier Formula Name Interactions EPE Search  Download  C8 H18 N2 O4 S 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID   Ligand Explorer GOL Search  Download  C3 H8 O3 GLYCEROL   Ligand Explorer NAG Search  Download  C8 H15 N O6 N-ACETYL-D-GLUCOSAMINE   Ligand Explorer SO4 Search  Download  O4 S SULFATE ION   Ligand Explorer     External Domain Annotations Hide CATH Classification v3.4.0: 3 Domains - data from CATH   Pfam Classification: 14 Domains - data from Pfam       Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Chen, L.,  Kwon, Y.D.,  Zhou, T.,  Wu, X.,  O'Dell, S.,  Cavacini, L.,  Hessell, A.J.,  Pancera, M.,  Tang, M.,  Xu, L.,  Yang, Z.Y.,  Zhang, M.Y.,  Arthos, J.,  Burton, D.R.,  Dimitrov, D.S.,  Nabel, G.J.,  Posner, M.,  Sodroski, J.,  Wyatt, R.,  Mascola, J.R.,  Kwong, P.D. Deposition:   2009-07-22 Release:   2009-11-17 Last Modified (REVDAT):   2011-07-13     Revision History    Hide Mouse over text for details 2011-07-13 Non-polymer description 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   2.50 R-Value: 0.181 (obs.) R-Free: 0.239 Space Group: C 2 2 2 Unit Cell:   Length [Å] Angles [°] a = 112.61 α = 90.00  b = 203.96 β = 90.00  c = 109.29 γ = 90.00      Molecule of the Month Hide Epidermal Growth Factor Nanobodies Antibodies Hemagglutinin