3ICJ

Crystal structure of an uncharacterized metal-dependent hydrolase from pyrococcus furiosus

• PDB DOI: https://doi.org/10.2210/pdb3ICJ/pdb
• Entry: 3ICJ supersedes: 3ETK

• Classification: HYDROLASE
• Organism(s): Pyrococcus furiosus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2009-07-17 Released: 2009-07-28 
• Deposition Author(s): Bonanno, J.B., Patskovsky, Y., Freeman, J., Bain, K.T., Hu, S., Ozyurt, S., Wasserman, S., Sauder, J.M., Raushel, F.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.95 Å
• R-Value Free: 0.267 
• R-Value Work: 0.207 
• R-Value Observed: 0.209 

Literature

Crystal Structure of an Uncharacterized Metal-Dependent Hydrolase from Pyrococcus Furiosus

Bonanno, J.B., Patskovsky, Y., Freeman, J., Bain, K.T., Hu, S., Ozyurt, S., Wasserman, S., Sauder, J.M., Raushel, F.M., Burley, S.K., Almo, S.C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 60.51 kDa 
• Atom Count: 4,070 
• Modelled Residue Count: 468 
• Deposited Residue Count: 534 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
uncharacterized metal-dependent hydrolase	A	534	Pyrococcus furiosus	Mutation(s): 0  Gene Names: PF0846
UniProt
Find proteins for Q8U2I8 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)) Explore Q8U2I8  Go to UniProtKB:  Q8U2I8

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZN	B [auth A], C [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
KCX	A	L-PEPTIDE LINKING	C7 H14 N2 O4		LYS

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.95 Å
• R-Value Free: 0.267 
• R-Value Work: 0.207 
• R-Value Observed: 0.209 
• Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 58.869	α = 90
b = 116.438	β = 90
c = 169.66	γ = 90

Software Package:

Software Name	Purpose
SHELXCD	phasing
SHELXE	model building
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2009-07-28 
Deposition Author(s): Bonanno, J.B., Patskovsky, Y., Freeman, J., Bain, K.T., Hu, S., Ozyurt, S., Wasserman, S., Sauder, J.M., Raushel, F.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
• This entry supersedes: 3ETK

Revision History  

• Version 1.0: 2009-07-28
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Advisory, Version format compliance
• Version 1.2: 2017-11-01
  Changes: Refinement description
• Version 1.3: 2018-11-21
  Changes: Data collection, Structure summary
• Version 1.4: 2021-02-10
  Changes: Database references, Derived calculations, Structure summary