3IBU

The crystal structure of the human carbonic anhydrase II in complex with an aliphatic sulfamate inhibitor

Structural Biology Knowledgebase: 3IBU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.41 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.200

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3IBU

Classification: LYASE / LYASE INHIBITOR

Total Structure Weight: 29835.01

Macromolecule Entities
Molecule Chains Length Organism Details
Carbonic anhydrase 2 A 259 Homo sapiens EC#: 4.2.1.1 IUBMB
Gene Name(s): CA2 Gene View

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HGB
Query on HGB

A 4-(HYDROXYMERCURY)BENZOIC ACID
C7 H6 Hg O3
WMHRYLDWLOGHSG-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
O48
Query on O48

A decyl sulfamate
n-decyl sulfamate (Synonym)
C10 H23 N O3 S
JBKMRMOTMJVNML-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
O48 Ki: 0.7 nM (100) BindingDB

Ki: 0.7 nM  BindingMOAD
Ki: 0.7 nM  PDBbind
CL Ki: >200000000 nM (100) BindingDB

N/A in BindingMoad


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.41 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.200
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 42.07 α = 90.00
b = 41.41 β = 104.29
c = 71.97 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-07-17
  • Released Date: 2009-09-22
  • Deposition author(s): Alterio, V., De Simone, G.

Revision History

  • 2011-08-24
    Type: Function and keywords | Details: --
  • 2011-08-24
    Type: Citation | Details: Citation update
  • 2011-08-24
    Type: Atom nomenclature | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4