3I6C

Structure-Based Design of Novel PIN1 Inhibitors (II)

Structural Biology Knowledgebase: 3I6C SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.164

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3I6C

Classification: Isomerase

Total Structure Weight: 28336.66

Macromolecule Entities
Molecule Chains Length Organism Details
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 A, B 123 Homo sapiens EC#: 5.2.1.8 IUBMB
Fragment: UNP residues 45-163
Mutation: K77Q, K82Q
Gene Name(s): PIN1 Gene View

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GIA
Query on GIA

A, B 3-fluoro-N-(naphthalen-2-ylcarbonyl)-D-phenylalanine
C20 H16 F N O3
JVSARVOIIXAOKH-GOSISDBHSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
GIA IC50: 12000 nM (98) BindingDB
Ki: 12000 nM (98) BindingDB

Ki: 12000 nM  BindingMOAD
Ki: 12000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.164
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 117.97 α = 90.00
b = 36.65 β = 100.99
c = 51.29 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-07-06
  • Released Date: 2010-04-21
  • Deposition author(s): Greasley, S.E., Ferre, R.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4