3HPE

Crystal structure of yceI (HP1286) from Helicobacter pylori


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.274
  • R-Value Work: 0.212

Literature

Macromolecules
Sequence Display for 3HPE

Classification: TRANSPORT PROTEIN

Total Structure Weight: 37999.96

Macromolecule Entities
Molecule Chains Length Organism Details
Conserved hypothetical secreted protein A, B 164 Helicobacter pylori Fragment: UNP residues 18-181
Mutation: R85K, A92V, M93V
Gene Name(s): HPAG1_1227
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ERU
Query on ERU

A, B (13Z)-docos-13-enamide
Erucamide, erucylamide (Synonym)
C22 H43 N O
UAUDZVJPLUQNMU-KTKRTIGZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.274
  • R-Value Work: 0.212
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 30.94 α = 90.00
b = 61.31 β = 92.88
c = 88.32 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-06-04
  • Released Date: 2010-04-14
  • Deposition author(s): Sisinni, L., Cendron, L., Zanotti, G.

Revision History

  • Version 1_0: 2010-04-14

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Advisory, Version format compliance