3HN2

Crystal structure of 2-dehydropantoate 2-reductase FROM Geobacter metallireducens GS-15

• PDB DOI: https://doi.org/10.2210/pdb3HN2/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Geobacter metallireducens GS-15
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2009-05-29 Released: 2009-06-09 
• Deposition Author(s): Patskovsky, Y., Toro, R., Morano, C., Rutter, M., Chang, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free: 0.292 
• R-Value Work: 0.243 
• R-Value Observed: 0.244 

Literature

Crystal structure of 2-dehydropantoate 2-reductase FROM Geobacter metallireducens

Patskovsky, Y., Toro, R., Morano, C., Rutter, M., Chang, S., Sauder, J.M., Burley, S.K., Almo, S.C.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 assigned by authors.

Macromolecule Content

• Total Structure Weight: 137.41 kDa 
• Atom Count: 9,315 
• Modelled Residue Count: 1,207 
• Deposited Residue Count: 1,248 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
2-dehydropantoate 2-reductase	A, B, C, D	312	Geobacter metallireducens GS-15	Mutation(s): 0  Gene Names: Gmet_2643 EC: 1.1.1.169
UniProt
Find proteins for Q39SB2 (Geobacter metallireducens (strain ATCC 53774 / DSM 7210 / GS-15)) Explore Q39SB2  Go to UniProtKB:  Q39SB2

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free: 0.292 
• R-Value Work: 0.243 
• R-Value Observed: 0.244 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 77.318	α = 90
b = 82.179	β = 90
c = 201.291	γ = 90

Software Package:

Software Name	Purpose
RESOLVE	model building
REFMAC	refinement
DENZO	data reduction
HKL-2000	data scaling
SHELXDE	phasing
RESOLVE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2009-06-09 
Deposition Author(s): Patskovsky, Y., Toro, R., Morano, C., Rutter, M., Chang, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History  

• Version 1.0: 2009-06-09
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Advisory, Refinement description, Source and taxonomy, Version format compliance
• Version 1.2: 2018-11-21
  Changes: Data collection, Structure summary
• Version 1.3: 2018-11-28
  Changes: Data collection, Refinement description
• Version 1.4: 2021-02-10
  Changes: Database references, Structure summary
• Version 1.5: 2024-02-21
  Changes: Data collection, Database references