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The X-ray crystal structure of RNA polymerase from Archaea
3HKZ
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase
    Structure Weight: 811628.28
    Molecule: DNA-directed RNA polymerase subunit A'
    Polymer: 1 Type: protein Length: 880
    Chains: A, I
    EC#: 2.7.7.6   
    Organism Sulfolobus solfataricus P2
    Gene Names rpoA1 SSO0225
    UniProtKB:   Protein Feature View | Search PDB | Q980R2  
    Molecule: DNA-directed RNA polymerase subunit A''
    Polymer: 2 Type: protein Length: 395
    Chains: C, M
    EC#: 2.7.7.6   
    Organism Sulfolobus solfataricus P2
    Gene Names rpoA2 SSO0223
    UniProtKB:   Protein Feature View | Search PDB | P58192  
    Molecule: DNA-directed RNA polymerase subunit B
    Polymer: 3 Type: protein Length: 1124
    Chains: B, J
    EC#: 2.7.7.6   
    Organism Sulfolobus solfataricus P2
    Gene Names rpoB1 SSO0227
    UniProtKB:   Protein Feature View | Search PDB | Q980R1  
    Molecule: DNA-directed RNA polymerase subunit D
    Polymer: 4 Type: protein Length: 265
    Chains: D, O
    EC#: 2.7.7.6   
    Organism Sulfolobus solfataricus P2
    Gene Names rpoD SSO0071 C04_051
    UniProtKB:   Protein Feature View | Search PDB | P95989  
    Molecule: DNA-directed RNA polymerase, subunit E' (RpoE1)
    Polymer: 5 Type: protein Length: 180
    Chains: E, Q
    EC#: 2.7.7.6   
    Organism Sulfolobus solfataricus P2
    Gene Names rpoE1 SSO0415
    UniProtKB:   Protein Feature View | Search PDB | Q980A3  
    Molecule: DNA-directed RNA polymerase, subunit F (RpoF)
    Polymer: 6 Type: protein Length: 113
    Chains: F, R
    EC#: 2.7.7.6   
    Organism Sulfolobus solfataricus P2
    Gene Name ORF-c20_042
    UniProtKB:   Protein Feature View | Search PDB | Q9UXD9  
    Molecule: DNA-directed RNA polymerase, subunit G (RpoG)
    Polymer: 7 Type: protein Length: 132
    Chains: G, S
    EC#: 2.7.7.6   
    Organism Sulfolobus solfataricus P2
    Gene Names rpoG SSO0277
    UniProtKB:   Protein Feature View | Search PDB | Q980L5  
    Molecule: DNA-directed RNA polymerase subunit H
    Polymer: 8 Type: protein Length: 84
    Chains: H, T
    EC#: 2.7.7.6   
    Organism Sulfolobus solfataricus P2
    Gene Names rpoH SSO5468
    UniProtKB:   Protein Feature View | Search PDB | Q980Q9  
    Molecule: DNA-directed RNA polymerase subunit K
    Polymer: 9 Type: protein Length: 95
    Chains: K, U
    EC#: 2.7.7.6   
    Organism Sulfolobus solfataricus P2
    Gene Names rpoK SSO6768
    UniProtKB:   Protein Feature View | Search PDB | Q97ZJ9  
    Molecule: DNA-directed RNA polymerase subunit L
    Polymer: 10 Type: protein Length: 92
    Chains: L, V
    EC#: 2.7.7.6   
    Organism Sulfolobus solfataricus P2
    Gene Names rpoL SSO5577
    UniProtKB:   Protein Feature View | Search PDB | Q980K0  
    Molecule: DNA-directed RNA polymerase subunit N
    Polymer: 11 Type: protein Length: 66
    Chains: N, W
    EC#: 2.7.7.6   
    Organism Sulfolobus solfataricus P2
    Gene Names rpoN SSO5140
    UniProtKB:   Protein Feature View | Search PDB | Q980Z8  
    Molecule: DNA-directed RNA polymerase subunit P
    Polymer: 12 Type: protein Length: 48
    Chains: P, X
    EC#: 2.7.7.6   
    Organism Sulfolobus solfataricus P2
    Gene Names rpoP SSO5865
    UniProtKB:   Protein Feature View | Search PDB | Q97ZX7  
    Molecule: DNA-directed RNA polymerase subunit 13
    Polymer: 13 Type: protein Length: 104
    Chains: Y, Z
    Organism Sulfolobus solfataricus P2
    Gene Name SSO0396
    UniProtKB:   Protein Feature View | Search PDB | Q980B8  
     
  •   Structure Validation Hide

    Download full validation report    

     
  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Sulfolobus solfataricus   Taxonomy    
    Polymer: 2
    Scientific Name: Sulfolobus solfataricus   Taxonomy    
    Polymer: 3
    Scientific Name: Sulfolobus solfataricus   Taxonomy    
    Polymer: 4
    Scientific Name: Sulfolobus solfataricus   Taxonomy    
    Polymer: 5
    Scientific Name: Sulfolobus solfataricus   Taxonomy    
    Polymer: 6
    Scientific Name: Sulfolobus solfataricus   Taxonomy    
    Polymer: 7
    Scientific Name: Sulfolobus solfataricus   Taxonomy    
    Polymer: 8
    Scientific Name: Sulfolobus solfataricus   Taxonomy    
    Polymer: 9
    Scientific Name: Sulfolobus solfataricus   Taxonomy    
    Polymer: 10
    Scientific Name: Sulfolobus solfataricus   Taxonomy    
    Polymer: 11
    Scientific Name: Sulfolobus solfataricus   Taxonomy    
    Polymer: 12
    Scientific Name: Sulfolobus solfataricus   Taxonomy    
    Polymer: 13
    Scientific Name: Sulfolobus solfataricus   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    2PA8  X-Ray Crystal Structure of the D/L Subcomplex of the Sulfolobus solfataricus RNA polymerase 
    2pmz  X-Ray Crystal Structure of the Sulfolobus Solfataricus RNA polymerase, 11-subunit structure 
    2WAQ  THE Complete structure of the archaeal 13-subunit DNA-directed RNA polymerase 
     
  •   Ligand Chemical Component Hide
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors
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  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Murakami, K.S.

    Deposition:   2009-05-26
    Release:   2009-06-09
     
  •   Revision History    Hide
    Mouse over text for details
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   3.40
    R-Value: 0.269 (obs.)
    R-Free: 0.341
    Space Group: P 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 125.82 α = 90.00 
    b = 201.24 β = 100.92 
    c = 196.05 γ = 90.00