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P38 kinase crystal structure in complex with pamapimod
3FLW
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Signaling Protein , Transferase
    Structure Weight: 43155.49
    Molecule: Mitogen-activated protein kinase 14
    Polymer: 1 Type: protein Length: 372
    Chains: A
    EC#: 2.7.11.24   
    Organism: Homo sapiens
    Gene Names: Gene View for MAPK14 CSBP CSBP1 CSBP2 CSPB1 MXI2 SAPK2A
    UniProtKB: Protein Feature View | Search PDB | Q16539  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    3FLN   
    3FLQ   
    3FLS   
    3FLY   
    3FLZ   
    3FMH   
    3FMJ   
    3FMK   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    FLW
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    FLW C19 H20 F2 N4 O4
    6-(2,4-difluorophenoxy)-2-{[3-hydroxy-1-(2- hydroxyethyl)propyl]amino}-8-methylpyrido[2,3- d]pyrimidin-7(8H)-one
    FLW:3FLW
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    FLW
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    FLW
    IC50: 14 nM (100) - data from BindingDB  
    Kd: 1.3 nM (100) - data from BindingDB  
    N/Ain BindingMoad
    N/Ain PDBbind
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Kuglstatter, A.,  Ghate, M.

    Deposition:   2008-12-19
    Release:   2009-12-22
    Last Modified (REVDAT):   2011-07-13
     
  •   Revision History    Hide
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    2011-07-13
    Refinement description
    2011-07-13
    Version format compliance
    2011-07-13
    Flag residual B-value
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.10
    R-Value: 0.213 (obs.)
    R-Free: 0.237
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 45.34 α = 90.00 
    b = 86.01 β = 90.00 
    c = 125.60 γ = 90.00