POP-OUT | CLOSE
Crystal structure of a translation termination complex formed with release factor RF2. This file contains the 50S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes as described in remark 400.
DOI:10.2210/pdb3f1f/pdb   NDB ID: RR0233
3F1F
Split Entry
The asymmetric unit for this structure is composed of multiple PDB entries:
3F1E   3F1F   3F1G   3F1H  
  Download All Files   

The complete entry has been assigned PDB ID 4V67 and is available for download in PDBx/mmCIF and PDBML/XML formats from the FTP archive at:
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/mmCIF/4v67.cif.gz
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/XML/4v67.xml.gz
 
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ribosome
    Structure Weight: 1421638.12
    Molecule: 23S RRNA
    Polymer: 1 Type: rna Length: 2894
    Chains: A
    Organism Thermus thermophilus
    Molecule: 5S RRNA
    Polymer: 2 Type: rna Length: 124
    Chains: B
    Organism Thermus thermophilus
    Molecule: 50S ribosomal protein L2
    Polymer: 3 Type: protein Length: 276
    Chains: D
    Organism Thermus thermophilus
    Gene Names rplB TT_C1325
    UniProtKB:   Protein Feature View | Search PDB | Q72I07  
    Molecule: 50S ribosomal protein L3
    Polymer: 4 Type: protein Length: 206
    Chains: E
    Organism Thermus thermophilus
    Gene Names rplC TT_C1328
    UniProtKB:   Protein Feature View | Search PDB | Q72I04  
    Molecule: 50S ribosomal protein L4
    Polymer: 5 Type: protein Length: 210
    Chains: F
    Organism Thermus thermophilus
    Gene Names rplD TT_C1327
    UniProtKB:   Protein Feature View | Search PDB | Q72I05  
    Molecule: 50S ribosomal protein L5
    Polymer: 6 Type: protein Length: 182
    Chains: G
    Organism Thermus thermophilus
    Gene Names rplE TT_C1316
    UniProtKB:   Protein Feature View | Search PDB | Q72I16  
    Molecule: 50S ribosomal protein L6
    Polymer: 7 Type: protein Length: 180
    Chains: H
    Organism Thermus thermophilus
    Gene Names rplF TT_C1313
    UniProtKB:   Protein Feature View | Search PDB | Q72I19  
    Molecule: 50S ribosomal protein L9
    Polymer: 8 Type: protein Length: 148
    Chains: I
    Organism Thermus thermophilus
    Gene Names rplI TT_C1743
    UniProtKB:   Protein Feature View | Search PDB | Q72GV5  
    Molecule: 50S ribosomal protein L11
    Polymer: 9 Type: protein Length: 147
    Chains: K
    Organism Thermus thermophilus
    Gene Names rplK rpl11
    UniProtKB:   Protein Feature View | Search PDB | P36238  
    Molecule: 50S ribosomal protein L13
    Polymer: 10 Type: protein Length: 163
    Chains: N
    Organism Thermus thermophilus
    Gene Names rplM TT_C1101
    UniProtKB:   Protein Feature View | Search PDB | Q72IN1  
    Molecule: 50S ribosomal protein L14
    Polymer: 11 Type: protein Length: 122
    Chains: O
    Organism Thermus thermophilus
    Gene Names rplN TT_C1318
    UniProtKB:   Protein Feature View | Search PDB | Q72I14  
    Molecule: 50S ribosomal protein L15
    Polymer: 12 Type: protein Length: 150
    Chains: P
    Organism Thermus thermophilus
    Gene Names rplO TT_C1309
    UniProtKB:   Protein Feature View | Search PDB | Q72I23  
    Molecule: 50S ribosomal protein L16
    Polymer: 13 Type: protein Length: 141
    Chains: Q
    Organism Thermus thermophilus
    Gene Names rplP TT_C1321
    UniProtKB:   Protein Feature View | Search PDB | Q72I11  
    Molecule: 50S ribosomal protein L17
    Polymer: 14 Type: protein Length: 118
    Chains: R
    Organism Thermus thermophilus
    Gene Names rplQ TT_C1299
    UniProtKB:   Protein Feature View | Search PDB | Q72I33  
    Molecule: 50S ribosomal protein L18
    Polymer: 15 Type: protein Length: 112
    Chains: S
    Organism Thermus thermophilus
    Gene Names rplR TT_C1312
    UniProtKB:   Protein Feature View | Search PDB | Q72I20  
    Molecule: 50S ribosomal protein L19
    Polymer: 16 Type: protein Length: 146
    Chains: T
    Organism Thermus thermophilus
    Gene Names rplS TT_C0669
    UniProtKB:   Protein Feature View | Search PDB | Q72JU9  
    Molecule: 50S ribosomal protein L20
    Polymer: 17 Type: protein Length: 118
    Chains: U
    Organism Thermus thermophilus
    Gene Names rplT TT_C0185
    UniProtKB:   Protein Feature View | Search PDB | Q72L76  
    Molecule: 50S ribosomal protein L21
    Polymer: 18 Type: protein Length: 101
    Chains: V
    Organism Thermus thermophilus
    Gene Names rplU TT_C1424
    UniProtKB:   Protein Feature View | Search PDB | Q72HR2  
    Molecule: 50S ribosomal protein L22
    Polymer: 19 Type: protein Length: 113
    Chains: W
    Organism Thermus thermophilus
    Gene Names rplV TT_C1323
    UniProtKB:   Protein Feature View | Search PDB | Q72I09  
    Molecule: 50S ribosomal protein L23
    Polymer: 20 Type: protein Length: 96
    Chains: X
    Organism Thermus thermophilus
    Gene Names rplW TT_C1326
    UniProtKB:   Protein Feature View | Search PDB | Q72I06  
    Molecule: 50S ribosomal protein L24
    Polymer: 21 Type: protein Length: 110
    Chains: Y
    Organism Thermus thermophilus
    Gene Names rplX TT_C1317
    UniProtKB:   Protein Feature View | Search PDB | Q72I15  
    Molecule: 50S ribosomal protein L25
    Polymer: 22 Type: protein Length: 206
    Chains: Z
    Organism Thermus thermophilus
    Gene Names rplY ctc TT_C1225
    UniProtKB:   Protein Feature View | Search PDB | Q72IA7  
    Molecule: 50S ribosomal protein L27
    Polymer: 23 Type: protein Length: 85
    Chains: 0
    Organism Thermus thermophilus
    Gene Names rpmA TT_C1423
    UniProtKB:   Protein Feature View | Search PDB | Q72HR3  
    Molecule: 50S ribosomal protein L28
    Polymer: 24 Type: protein Length: 98
    Chains: 1
    Organism Thermus thermophilus
    Gene Names rpmB TT_C1964
    UniProtKB:   Protein Feature View | Search PDB | Q72G84  
    Molecule: 50S ribosomal protein L29
    Polymer: 25 Type: protein Length: 72
    Chains: 2
    Organism Thermus thermophilus
    Gene Names rpmC TT_C1320
    UniProtKB:   Protein Feature View | Search PDB | Q72I12  
    Molecule: 50S ribosomal protein L30
    Polymer: 26 Type: protein Length: 60
    Chains: 3
    Organism Thermus thermophilus
    Gene Names rpmD TT_C1310
    UniProtKB:   Protein Feature View | Search PDB | Q72I22  
    Molecule: 50S ribosomal protein L31
    Polymer: 27 Type: protein Length: 97
    Chains: 4
    Organism Thermus thermophilus
    Gene Names rpmE TT_C0708
    UniProtKB:   Protein Feature View | Search PDB | Q72JR0  
    Molecule: 50S ribosomal protein L32
    Polymer: 28 Type: protein Length: 60
    Chains: 5
    Organism Thermus thermophilus
    Gene Names rpmF rpl32 TT_C0050
    UniProtKB:   Protein Feature View | Search PDB | P62652  
    Molecule: 50S ribosomal protein L33
    Polymer: 29 Type: protein Length: 54
    Chains: 6
    Organism Thermus thermophilus
    Gene Names rpmG TT_C1735
    UniProtKB:   Protein Feature View | Search PDB | Q72GW3  
    Molecule: 50S ribosomal protein L34
    Polymer: 30 Type: protein Length: 49
    Chains: 7
    Organism Thermus thermophilus
    Gene Names rpmH rpl34 TTHA0446
    UniProtKB:   Protein Feature View | Search PDB | P80340  
    Molecule: 50S ribosomal protein L35
    Polymer: 31 Type: protein Length: 65
    Chains: 8
    Organism Thermus thermophilus
    Gene Names rpmI TT_C0184
    UniProtKB:   Protein Feature View | Search PDB | Q72L77  
     
  •   Structure Validation Hide

    Download full validation report    

     
  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 2
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 3
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 4
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 5
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 6
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 7
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 8
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 9
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 10
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 11
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 12
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 13
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 14
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 15
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 16
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 17
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 18
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 19
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 20
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 21
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 22
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 23
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 24
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 25
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 26
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 27
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 28
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 29
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 30
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 31
    Scientific Name: Thermus thermophilus   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    3D5A  RF1-bound 70S termination complex 
    3D5B  RF1-bound 70S termination complex 
    3D5C  RF1-bound 70S termination complex 
    3D5D  RF1-bound 70S termination complex 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    MG
    Search 
    Download 
    MG Mg
    MAGNESIUM ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: RR0233
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Composite of PDB entries (3F1E and 3F1F)