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Crystal structure of cyclophilin from Leishmania donovani ligated with cyclosporin A
3EOV
Primary Citation
 
 
  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Molecular Description Hide
    Classification: Isomerase/immunosuppressant
    Structure Weight: 40622.68
    Molecule: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
    Polymer: 1 Type: protein Length: 172
    Chains: A, B
    EC#: 5.2.1.8   
    Organism Leishmania donovani
    Gene Name CYP
    UniProtKB:   Protein Feature View | Search PDB | Q9U9R3  
    Molecule: CYCLOSPORIN A
    Polymer: 2 Type: protein Length: 11
    Chains: C, D
    Organism Tolypocladium inflatum
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Leishmania donovani   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct (Tolypocladium inflatum)   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1BCK  CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH CYCLOSPORIN C 
    1C5F  CRYSTAL STRUCTURE OF THE CYCLOPHILIN-LIKE DOMAIN FROM BRUGIA MALAYI COMPLEXED WITH CYCLOSPORIN A 
    1CSA  SOLUTION STRUCTURE OF E.COLI CYCLOPHILIN (F112W) COMPLEXED WITH CYCLOSPORIN A 
    1CWA  CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH CYCLOSPORIN A 
    1CWB  CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH MODIFIED CYCLOSPORIN A AT POSITION 5 
    1CWC  CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH MODIFIED CYCLOSPORIN A AT POSITION 8 
    1CWF  CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH CYCLOSPORIN D 
    1CWH  CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH CYCLOSPORIN A MODIFIED AT POSITION 7 
    1CWI  CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH MODIFIED CYCLOSPORIN D AT POSITION 7 
    1CWJ  CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH MODIFIED CYCLOSPORIN D AT POSITIONS 5 AND 7. 
    1CWK  CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH MODIFIED CYCLOSPORIN D AT POSITIONS 5 AND 7. 
    1CWL  CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH MODIFIED CYCLOSPORIN A AT POSITION 8 
    1CWM  CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH MODIFIED CYCLOSPORIN A AT POSITION 8 
    1CWO  CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH NODIFIED CYCLOSPORIN C AT POSITIONS 1, AND 9 
    1CYA  SOLUTION STRUCTURE OF HUMAN CYCLOPHILIN COMPLEXED WIYH CYCLOSPORIN A 
    1CYB  SOLUTION STRUCTURE OF HUMAN CYCLOPHILIN COMPLEXED WITH CYCLOSPORIN A 
    1CYN  CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN B COMPLEXED WITH MODIFIED CYCLOSPORIN A 
    1IKF  CRYSTAL STRUCTURE OF CTCLOSPORIN-FAB COMPLEX 
    1M63  CRYSTAL STRUCTURE OF CALCINEURIN-CYCLOPHILIN-CYCLOSPORIN COMPLEX 
    1MF8  CRYSTAL STRUCTURE OF HUMAN CALCINEURIN COMPLEXED WITH HUMAN CYCLOPHILIN AND CYCLOSPORIN A 
    1MIK  CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH MODIFIED CYCLOSPORIN A AT POSITION 6 
    1QNG  CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM CYCLOPHILIN COMPLEXED WITH CYCLOSPORIN A 
    1QNH  CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM CYCLOPHILIN (DOUBLE MUTANT) COMPLEXED WITH CYCLOSPORIN A 
    1XQ7  CRYSTAL STRUCTURE OF TRYPANOSOMA CRUZI CYCLOPHILIN COMPLEXED WITH CYCLOSPORIN A 
    2ESL  CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN C COMPLEXED WITH CYCLOSPORIN A 
    2HAQ  CRYSTAL STRUCTURE OF NATIVE CYCLOPHILIN FROM LEISHMANIA DONOVANI AT 1.97 A RESOLUTION 
    2OJU  CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN J COMPLEXED WITH CYCLOSPORIN A 
    2POY  CRYSTAL STRUCTURE OF CRYPTOSPORIDIUM PARVUM IOWA II CYCLOPHILIN A COMPLEXED WITH CYCLOSPORIN A 
    2RMA  CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH CYCLOSPORIN A 
    2RMB  CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN A COMPLEXED WITH MODIFIED CYCLOSPORIN A AT POSITION 5 
    2RMC  CRYSTAL STRUCTURE OF MURINE CYCLOPHILIN C COMPLEXED WITH CYCLOSPORIN A 
    2WFJ  CRYSTAL STRUCTURE OF THE PPIASE DOMAIN OF HUMAN CYCLOPHILIN G COMPLEXED WITH CYCLOSPORIN A 
    2X2C  CRYSTAL STRUCTURE OF HUMAN ACETYL-CYPA COMPLEXED WITH CYCLOSPORINE A 
    2X7K  CRYSTAL STRUCTURE OF PPIL1 COMPLEXED WITH CYCLOSPORINE A 
    2Z6W  CRYSTAL STRUCTURE OF HUMAN CYCLOPHILIN D IN COMPLEX WITH CYCLOSPORIN A 
    3BO7  CRYSTAL STRUCTURE OF CYCLOSPHILIN A FROM TOXOPLASMA GONDII COMPLEXED WIT CYCLOSPORIN A 
    3CYS  SOLUTION STRUCTURE OF THE HUMAN CYCLOSPORIN A COMPLEXED WITH CYCLOSPORIN A 
     
  •   Biologically Interesting Molecules (BIRD) Hide
    Identifier Image Name Type Class Chain ID  
    PRD_000142 Search  PRD_000142 Cyclosporin A Cyclic peptide Immunosuppressant C,D
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    DAL
    Search      		DAL C3 H7 N O2 dPeptideLinking
    MLE
    Search      		MLE C7 H15 N O2 LEU lPeptideLinking
    MVA
    Search      		MVA C6 H13 N O2 VAL lPeptideLinking
    BMT
    Search      		BMT C10 H19 N O3 THR lPeptideLinking
    ABA
    Search      		ABA C4 H9 N O2 ALA lPeptideLinking
    SAR
    Search      		SAR C3 H7 N O2 GLY glycine
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
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  Biological Assembly 1       
Biological assembly 1 generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Venugopal, V.,  Dasgupta, D.,  Datta, A.K.,  Banerjee, R.

    Deposition:   2008-09-29
    Release:   2008-11-11
    Last Modified (REVDAT):   2011-07-27
     
  •   Revision History    Hide
    Mouse over text for details
    2012-12-12
    Other
    2011-07-27
    Atom nomenclature
    2011-07-27
    Binding sites and description
    2011-07-27
    Non-polymer description
    2011-07-27
    Function and keywords
    2011-07-27
    Linkage
    2011-07-27
    Sequence database correspondence
    2011-07-27
    Polymer description
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.60
    R-Value: 0.207 (obs.)
    R-Free: 0.251
    Space Group: C 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 69.81 α = 90.00 
    b = 83.13 β = 103.03 
    c = 73.58 γ = 90.00