3EOV

Crystal structure of cyclophilin from Leishmania donovani ligated with cyclosporin A

Structural Biology Knowledgebase: 3EOV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.207

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3EOV

Classification: ISOMERASE / IMMUNOSUPPRESSANT

Total Structure Weight: 40622.68

Macromolecule Entities
Molecule Chains Length Organism Details
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A, B 172 Leishmania donovani EC#: 5.2.1.8 IUBMB
Gene Name(s): CYP
CYCLOSPORIN A C, D 11 Tolypocladium inflatum

Small Molecules
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000142 (VAL,ABA,ALA,SAR,DAL,MVA,MLE,BMT) C, D Cyclosporin A Cyclic peptide /
Immunosuppressant
Ligand Explorer Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.207
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 69.81 α = 90.00
b = 83.13 β = 103.03
c = 73.58 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-09-29
  • Released Date: 2008-11-11
  • Deposition author(s): Venugopal, V., Dasgupta, D., Datta, A.K., Banerjee, R.

Revision History

  • 2012-12-12
    Type: Other | Details: Add PRD info
  • 2011-07-27
    Type: Linkage | Details: Linkage
  • 2011-07-27
    Type: Sequence database correspondence | Details: Sequence database correspondence
  • 2011-07-27
    Type: Polymer description | Details: Changed inhibitor presentation or chemistry
  • 2011-07-27
    Type: Atom nomenclature | Details: Atom nomenclature
  • 2011-07-27
    Type: Binding sites and description | Details: Binding sites and description
  • 2011-07-27
    Type: Non-polymer description | Details: Non-polymer description
  • 2011-07-27
    Type: Function and keywords | Details: Function and keywords
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4