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Q138F HincII bound to GTCGAC and Ca2+ (cocrystallized)
DOI:10.2210/pdb3e42/pdb   NDB ID: PD1171
3E42
Primary Citation
 
 
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  •   Molecular Description Hide
    Classification: Hydrolase/dna
    Structure Weight: 68370.54
    Molecule: Type-2 restriction enzyme HindII
    Polymer: 1 Type: protein Length: 257
    Chains: A, B
    EC#: 3.1.21.4   
    Mutation: Q138F
    Organism Haemophilus influenzae
    Gene Name hincIIR
    UniProtKB:   Protein Feature View | Search PDB | P17743  
    Molecule: 5'-D(*DGP*DCP*DCP*DGP*DGP*DTP*DCP*DGP*DAP*DCP*DCP*DGP*DGP*DC)-3'
    Polymer: 2 Type: dna Length: 14
    Chains: E, F
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Haemophilus influenzae   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
     
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    Identifier Details
    2GIH  Q138F HincII bound to GTCGAC and Ca2+ (soaked into preformed crystals) 
    3E3Y   
    3E40   
    3E41  Q138F HincII bound to GTCGAC and Ca2+ (cocrystallized) 
    3E43   
    3E44   
    3E45   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name Interactions
    CA
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    Download      		CA Ca
    CALCIUM ION
    NA
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    Download      		NA Na
    SODIUM ION
     
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  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PD1171
     
 
Data in orange boxes are gathered from external resources (when available).
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  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Horton, N.C.,  Babic, A.C.,  Little, E.J.,  Manohar, V.M.

    Deposition:   2008-08-08
    Release:   2008-08-26
    Last Modified (REVDAT):   2009-01-20
     
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.68
    R-Value: 0.192 (obs.)
    R-Free: 0.283
    Space Group: P 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 50.03 α = 90.00 
    b = 90.14 β = 104.40 
    c = 66.44 γ = 90.00