Q138F HincII bound to GTCGAC and Ca2+ (cocrystallized)
DOI:10.2210/pdb3e42/pdb   NDB ID: PD1171
3E42
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase/dna
    Structure Weight: 68370.54
    Molecule: Type-2 restriction enzyme HindII
    Polymer: 1 Type: protein Length: 257
    Chains: A, B
    EC#: 3.1.21.4   
    Mutation: Q138F
    Organism: Haemophilus influenzae
    Gene Name: hincIIR
    UniProtKB: Protein Feature View | Search PDB | P17743  
    Molecule: 5'-D(*DGP*DCP*DCP*DGP*DGP*DTP*DCP*DGP*DAP*DCP*DCP*DGP*DGP*DC)-3'
    Polymer: 2 Type: dna Length: 14
    Chains: E, F
     
  •   Structure Validation Hide

    View the full validation report  

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Haemophilus influenzae   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    2GIH   Q138F HincII bound to GTCGAC and Ca2+ (soaked into preformed crystals) 
    3E3Y    
    3E40    
    3E41   Q138F HincII bound to GTCGAC and Ca2+ (cocrystallized) 
    3E43    
    3E44    
    3E45    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CA
    Search 
    Download 
    CA Ca
    CALCIUM ION
    NA
    Search 
    Download 
    NA Na
    SODIUM ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:PD1171
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Horton, N.C.,  Babic, A.C.,  Little, E.J.,  Manohar, V.M.

    Deposition:   2008-08-08
    Release:   2008-08-26
    Last Modified (REVDAT):   2009-01-20
     
  •   Revision History    Hide
    Mouse over text for details
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.68
    R-Value: 0.192 (obs.)
    R-Free: 0.283
    Space Group: P 1 21 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 50.03 α = 90.00 
    b = 90.14 β = 104.40 
    c = 66.44 γ = 90.00