3DMU

Crystal structure of Staphylococcal nuclease variant PHS T62K at cryogenic temperature

Structural Biology Knowledgebase: 3DMU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.198

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3DMU

Classification: HYDROLASE

Total Structure Weight: 17003.65

Macromolecule Entities
Molecule Chains Length Organism Details
Thermonuclease A 149 Staphylococcus aureus EC#: 3.1.31.1 IUBMB
Gene Name(s): nuc

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MPD
Query on MPD

A (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer
 
JSmol
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.198
  • Space Group: P 41
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 48.22 α = 90.00
b = 48.22 β = 90.00
c = 63.28 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-07-01
  • Released Date: 2008-11-04
  • Deposition author(s): Khangulov, V.S., Schlessman, J.L., Garcia-Moreno, E.B., Benning, M., Isom, D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4