The Structure of CA and CCA-PHE-CAP-BIO Bound to the Large Ribosomal Subunit of Haloarcula Marismortui DOI:10.2210/pdb3cme/pdb   NDB ID: RR0219

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Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Ribosome Structure Weight: 1495139.13 Molecule: 50S ribosomal protein L2P Polymer: 1 Type: protein Length: 240 Chains: A Organism Haloarcula marismortui Gene Names rpl2p rrnAC1608 UniProtKB:   Protein Feature View | Search PDB | P20276     Molecule: 50S ribosomal protein L3P Polymer: 2 Type: protein Length: 338 Chains: B Organism Haloarcula marismortui Gene Names rpl3p rpl3 rrnAC1611 UniProtKB:   Protein Feature View | Search PDB | P20279     Molecule: 50S ribosomal protein L4P Polymer: 3 Type: protein Length: 246 Chains: C Organism Haloarcula marismortui Gene Names rpl4p rpl4 rrnAC1610 UniProtKB:   Protein Feature View | Search PDB | P12735     Molecule: 50S ribosomal protein L5P Polymer: 4 Type: protein Length: 177 Chains: D Organism Haloarcula marismortui Gene Names rpl5p rrnAC1598 UniProtKB:   Protein Feature View | Search PDB | P14124     Molecule: 50S ribosomal protein L6P Polymer: 5 Type: protein Length: 178 Chains: E Organism Haloarcula marismortui Gene Names rpl6p rrnAC1596 UniProtKB:   Protein Feature View | Search PDB | P14135     Molecule: 50S ribosomal protein L7Ae Polymer: 6 Type: protein Length: 120 Chains: F Organism Haloarcula marismortui Gene Names rpl7ae rrnAC0103 UniProtKB:   Protein Feature View | Search PDB | P12743     Molecule: 50S ribosomal protein L10E Polymer: 7 Type: protein Length: 348 Chains: G Organism Haloarcula marismortui Gene Names rplP0 rpl10e rrnAC1417 UniProtKB:   Protein Feature View | Search PDB | P15825     Molecule: 50S ribosomal protein L10e Polymer: 8 Type: protein Length: 177 Chains: H Organism Haloarcula marismortui Gene Names rpl10e rrnAC2357 UniProtKB:   Protein Feature View | Search PDB | P60617     Molecule: 50S ribosomal protein L11P Polymer: 9 Type: protein Length: 162 Chains: I Organism Haloarcula marismortui Gene Names rpl11p rrnAC1414 UniProtKB:   Protein Feature View | Search PDB | P14122     Molecule: 50S ribosomal protein L13P Polymer: 10 Type: protein Length: 145 Chains: J Organism Haloarcula marismortui Gene Names rpl13p rrnAC0065 UniProtKB:   Protein Feature View | Search PDB | P29198     Molecule: 50S ribosomal protein L14P Polymer: 11 Type: protein Length: 132 Chains: K Organism Haloarcula marismortui Gene Names rpl14p rrnAC1602 UniProtKB:   Protein Feature View | Search PDB | P22450     Molecule: 50S ribosomal protein L15P Polymer: 12 Type: protein Length: 165 Chains: L Organism Haloarcula marismortui Gene Names rpl15p rrnAC1590 UniProtKB:   Protein Feature View | Search PDB | P12737     Molecule: 50S ribosomal protein L15e Polymer: 13 Type: protein Length: 196 Chains: M Organism Haloarcula marismortui Gene Names rpl15e rrnAC2065 UniProtKB:   Protein Feature View | Search PDB | P60618     Molecule: 50S ribosomal protein L18P Polymer: 14 Type: protein Length: 187 Chains: N Organism Haloarcula marismortui Gene Names rpl18p rrnAC1593 UniProtKB:   Protein Feature View | Search PDB | P14123     Molecule: 50S ribosomal protein L18e Polymer: 15 Type: protein Length: 116 Chains: O Organism Haloarcula marismortui Gene Names rpl18e rrnAC0064 UniProtKB:   Protein Feature View | Search PDB | P12733     Molecule: 50S ribosomal protein L19e Polymer: 16 Type: protein Length: 149 Chains: P Organism Haloarcula marismortui Gene Names rpl19e rrnAC1594 UniProtKB:   Protein Feature View | Search PDB | P14119     Molecule: 50S ribosomal protein L21e Polymer: 17 Type: protein Length: 96 Chains: Q Organism Haloarcula marismortui Gene Names rpl21e rrnAC0260 UniProtKB:   Protein Feature View | Search PDB | P12734     Molecule: 50S ribosomal protein L22P Polymer: 18 Type: protein Length: 155 Chains: R Organism Haloarcula marismortui Gene Names rpl22p rrnAC1606 UniProtKB:   Protein Feature View | Search PDB | P10970     Molecule: 50S ribosomal protein L23P Polymer: 19 Type: protein Length: 85 Chains: S Organism Haloarcula marismortui Gene Names rpl23p rrnAC1609 UniProtKB:   Protein Feature View | Search PDB | P12732     Molecule: 50S ribosomal protein L24P Polymer: 20 Type: protein Length: 120 Chains: T Organism Haloarcula marismortui Gene Names rpl24p rrnAC1601 UniProtKB:   Protein Feature View | Search PDB | P10972     Molecule: 50S ribosomal protein L24e Polymer: 21 Type: protein Length: 67 Chains: U Organism Haloarcula marismortui Gene Names rpl24e rrnAC0104 UniProtKB:   Protein Feature View | Search PDB | P14116     Molecule: 50S ribosomal protein L29P Polymer: 22 Type: protein Length: 71 Chains: V Organism Haloarcula marismortui Gene Names rpl29p rrnAC1604 UniProtKB:   Protein Feature View | Search PDB | P10971     Molecule: 50S ribosomal protein L30P Polymer: 23 Type: protein Length: 154 Chains: W Organism Haloarcula marismortui Gene Names rpl30p rrnAC1591 UniProtKB:   Protein Feature View | Search PDB | P14121     Molecule: 50S ribosomal protein L31e Polymer: 24 Type: protein Length: 92 Chains: X Organism Haloarcula marismortui Gene Names rpl31e rrnAC3113 UniProtKB:   Protein Feature View | Search PDB | P18138     Molecule: 50S ribosomal protein L32e Polymer: 25 Type: protein Length: 240 Chains: Y Organism Haloarcula marismortui Gene Names rpl32e rrnAC1595 UniProtKB:   Protein Feature View | Search PDB | P12736     Molecule: 50S ribosomal protein L37Ae Polymer: 26 Type: protein Length: 116 Chains: Z Organism Haloarcula marismortui Gene Names rpl37ae rrnAC1669 UniProtKB:   Protein Feature View | Search PDB | P60619     Molecule: 50S ribosomal protein L37e Polymer: 27 Type: protein Length: 57 Chains: 1 Organism Haloarcula marismortui Gene Names rpl37e rrnAC0797.1 UniProtKB:   Protein Feature View | Search PDB | P32410     Molecule: 50S ribosomal protein L39e Polymer: 28 Type: protein Length: 50 Chains: 2 Organism Haloarcula marismortui Gene Names rpl39e rrnAC3112 UniProtKB:   Protein Feature View | Search PDB | P22452     Molecule: 50S ribosomal protein L44E Polymer: 29 Type: protein Length: 92 Chains: 3 Organism Haloarcula marismortui Gene Names rpl44e rrnAC3514 UniProtKB:   Protein Feature View | Search PDB | P32411     Molecule: 50S RIBOSOMAL RNA Polymer: 30 Type: rna Length: 2923 Chains: 0 Organism Haloarcula marismortui Molecule: 5S RIBOSOMAL RNA Polymer: 31 Type: rna Length: 122 Chains: 9 Organism Haloarcula marismortui Molecule: RNA (5'-R(*C*CP*A)-3') Polymer: 32 Type: rna Length: 3 Chains: 5 Molecule: RNA (5'-R(*CP*CP*(8AN))-3') Polymer: 33 Type: rna Length: 3 Chains: 6     Source Hide Polymer: 1 Scientific Name: Haloarcula marismortui   Taxonomy   Common Name: Halobacterium marismortui   Polymer: 2 Scientific Name: Haloarcula marismortui   Taxonomy   Common Name: Halobacterium marismortui   Polymer: 3 Scientific Name: Haloarcula marismortui   Taxonomy   Common Name: Halobacterium marismortui   Polymer: 4 Scientific Name: Haloarcula marismortui   Taxonomy   Common Name: Halobacterium marismortui   Polymer: 5 Scientific Name: Haloarcula marismortui   Taxonomy   Common Name: Halobacterium marismortui   Polymer: 6 Scientific Name: Haloarcula marismortui   Taxonomy   Common Name: Halobacterium marismortui   Polymer: 7 Scientific Name: Haloarcula marismortui   Taxonomy   Common Name: Halobacterium marismortui   Polymer: 8 Scientific Name: Haloarcula marismortui   Taxonomy   Common Name: Halobacterium marismortui   Polymer: 9 Scientific Name: Haloarcula marismortui   Taxonomy   Common Name: Halobacterium marismortui   Polymer: 10 Scientific Name: Haloarcula marismortui   Taxonomy   Common Name: Halobacterium marismortui   Polymer: 11 Scientific Name: Haloarcula marismortui   Taxonomy   Common Name: Halobacterium marismortui   Polymer: 12 Scientific Name: Haloarcula marismortui   Taxonomy   Common Name: Halobacterium marismortui   Polymer: 13 Scientific Name: Haloarcula marismortui   Taxonomy   Common Name: Halobacterium marismortui   Polymer: 14 Scientific Name: Haloarcula marismortui   Taxonomy   Common Name: Halobacterium marismortui   Polymer: 15 Scientific Name: Haloarcula marismortui   Taxonomy   Common Name: Halobacterium marismortui   Polymer: 16 Scientific Name: Haloarcula marismortui   Taxonomy   Common Name: Halobacterium marismortui   Polymer: 17 Scientific Name: Haloarcula marismortui   Taxonomy   Common Name: Halobacterium marismortui   Polymer: 18 Scientific Name: Haloarcula marismortui   Taxonomy   Common Name: Halobacterium marismortui   Polymer: 19 Scientific Name: Haloarcula marismortui   Taxonomy   Common Name: Halobacterium marismortui   Polymer: 20 Scientific Name: Haloarcula marismortui   Taxonomy   Common Name: Halobacterium marismortui   Polymer: 21 Scientific Name: Haloarcula marismortui   Taxonomy   Common Name: Halobacterium marismortui   Polymer: 22 Scientific Name: Haloarcula marismortui   Taxonomy   Common Name: Halobacterium marismortui   Polymer: 23 Scientific Name: Haloarcula marismortui   Taxonomy   Common Name: Halobacterium marismortui   Polymer: 24 Scientific Name: Haloarcula marismortui   Taxonomy   Common Name: Halobacterium marismortui   Polymer: 25 Scientific Name: Haloarcula marismortui   Taxonomy   Common Name: Halobacterium marismortui   Polymer: 26 Scientific Name: Haloarcula marismortui   Taxonomy   Common Name: Halobacterium marismortui   Polymer: 27 Scientific Name: Haloarcula marismortui   Taxonomy   Common Name: Halobacterium marismortui   Polymer: 28 Scientific Name: Haloarcula marismortui   Taxonomy   Common Name: Halobacterium marismortui   Polymer: 29 Scientific Name: Haloarcula marismortui   Taxonomy   Common Name: Halobacterium marismortui   Polymer: 30 Scientific Name: Haloarcula marismortui   Taxonomy   Common Name: Halobacterium marismortui   Polymer: 31 Scientific Name: Haloarcula marismortui   Taxonomy   Common Name: Halobacterium marismortui   Polymer: 32 Scientific Name: Synthetic construct   Taxonomy     Polymer: 33 Scientific Name: Synthetic construct   Taxonomy         Related PDB Entries Hide Identifier Details 3CMA  THE STRUCTURE OF CCA AND CCA-PHE-CAP-BIO BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI      Ligand Chemical Component Hide Identifier Formula Name Interactions ACA Search  Download  C6 H13 N O2 6-AMINOHEXANOIC ACID   Ligand Explorer CD Search  Download  Cd CADMIUM ION   Ligand Explorer CL Search  Download  Cl CHLORIDE ION   Ligand Explorer K Search  Download  K POTASSIUM ION   Ligand Explorer MG Search  Download  Mg MAGNESIUM ION   Ligand Explorer NA Search  Download  Na SODIUM ION   Ligand Explorer PHE Search  Download  C9 H11 N O2 PHENYLALANINE   Ligand Explorer SR Search  Download  Sr STRONTIUM ION   Ligand Explorer     Modified Residues Hide Identifier Formula Parent Type 1MA Search  C11 H16 N5 O7 P A rnaLinking OMU Search  C10 H15 N2 O9 P U rnaLinking OMG Search  C11 H16 N5 O8 P G rnaLinking UR3 Search  C10 H15 N2 O9 P U rnaLinking PSU Search  C9 H13 N2 O9 P U rnaLinking 8AN Search  C10 H15 N6 O6 P A rnaLinking     External Domain Annotations Hide SCOP Classification v1.75: 25 Domains - data from SCOP   CATH Classification v3.4.0: 36 Domains - data from CATH   Pfam Classification: 33 Domains - data from Pfam   GO Terms: 219 Terms - data from GO      Structural Biology Knowledgebase Data Hide   Nucleic Acid Database Hide View the NDB ID associated with this structure: RR0219     Data in orange boxes are gathered from external resources (when available). 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Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Simonovic, M.,  Steitz, T.A. Deposition:   2008-03-21 Release:   2008-09-23 Last Modified (REVDAT):   2011-07-13     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance 2011-07-13 Non-polymer description     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   2.95 R-Value: 0.198 (work) R-Free: 0.255 Space Group: C 2 2 21 Unit Cell:   Length [Å] Angles [°] a = 210.79 α = 90.00  b = 297.78 β = 90.00  c = 572.59 γ = 90.00      Molecule of the Month Hide Ribosomal Subunits Ribosome Ricin