RCSB Protein Data Bank - RCSB PDB - 3CKD Structure Summary

This browser is either not Javascript enabled or has it turned off.
This site will not function correctly without Javascript.

Crystal structure of the C-terminal domain of the Shigella type III effector IpaH

DOI:10.2210/pdb3ckd/pdb

3CKD

Display Files

FASTA Sequence
PDB File
PDB File (Header)
mmCIF File
mmCIF File (Header)
PDBML/XML File
PDBML/XML File (Header)

Download Files

FASTA Sequence
PDB File (Text)
PDB File (gz)
mmCIF File
mmCIF File (gz)
PDBML/XML File
PDBML/XML File (gz)
Structure Factor (Text)
Structure Factor (gz)

Share this Page

Facebook Twitter LinkedIn Email

Link this Page

Primary Citation

Related Citations in PDB Entry (REMARK 1) Hide

Molecular Description

Hide

Classification:	Ligase
Structure Weight:	107499.32

Molecule:

Invasion plasmid antigen, secreted by the Mxi-Spa secretion machinery

Polymer:

Type:

protein

Length:

312

Chains:

A, B, C

EC#:

Fragment:

C-terminal ligase domain: Residues 265-575

Organism

Shigella flexneri 2a str. 301

Gene Name

ipaH1.4

UniProtKB:

| | Q8VSA1

Source

Hide

Polymer: 1

Scientific Name:

Shigella flexneri 2a str. 301

Taxonomy

Expression System:

Escherichia coli

Ligand Chemical Component

Hide

Identifier	Formula	Name	Interactions
GOL Search Download	C₃ H₈ O₃	GLYCEROL		Ligand Explorer
PEG Search Download	C₄ H₁₀ O₃	DI(HYDROXYETHYL)ETHER		Ligand Explorer
SO4 Search Download	O₄ S	SULFATE ION		Ligand Explorer

Modified Residues

Hide

Identifier		Formula	Parent	Type
MSE Search		C₅ H₁₁ N O₂ Se	MET	lPeptideLinking

External Domain Annotations Hide
CATH Classification v3.4.0: 9 Domains - data from CATH
Structural Biology Knowledgebase Data Hide

Data in orange boxes are gathered from external resources (when available).

Reset Layout

Biological Assembly 1

View in 3D

More Images...

Biological assembly 1 assigned by authors

Downloadable viewers:

MyPDB Personal Annotations Hide

Deposition Summary

Hide

Authors: Lam, R., Singer, A.U., Cuff, M.E., Skarina, T., Kagan, O., DiLeo, R., Edwards, A.M., Joachimiak, A., Savchenko, A., Midwest Center for Structural Genomics

Deposition:	2008-03-14
Release:	2008-03-25
Last Modified (REVDAT):	2011-07-13

Revision History Hide

Mouse over text for details

2011-07-13
Version format compliance

2011-07-13
Non-polymer description

Experimental Details

Hide

Method: X-RAY DIFFRACTION
Exp. Data:
Structure Factors
EDS

Unit Cell:
	Length [Å]	Angles [°]
	a = 128.93	α = 90.00
	b = 128.93	β = 90.00
	c = 282.83	γ = 90.00