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Crystal structure of a complex between the wild-type lactococcus lactis Fpg (MutM) and a N7-Benzyl-Fapy-dG containing DNA
DOI:10.2210/pdb3c58/pdb   NDB ID: PD1092
3C58
Primary Citation
 
 
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  •   Molecular Description Hide
    Classification: Hydrolase/dna
    Structure Weight: 39939.82
    Molecule: DNA (5'-D(*DGP*DCP*DGP*DAP*DGP*DAP*DAP*DAP*DCP*DAP*DAP*DAP*DGP*DA)-3')
    Polymer: 1 Type: dna Length: 14
    Chains: C
    Molecule: DNA (5'-D(*DCP*DTP*DCP*DTP*DTP*DTP*(SOS)P*DTP*DTP*DTP*DCP*DTP*DCP*DG)-3')
    Polymer: 2 Type: dna Length: 14
    Chains: B
    Molecule: DNA glycosylase
    Polymer: 3 Type: protein Length: 271
    Chains: A
    EC#: 3.2.2.23    4.2.99.18   
    Organism Lactococcus lactis subsp. cremoris MG1363
    Gene Names mutM fpg
    UniProtKB:   Protein Feature View | Search PDB | P42371  
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Lactococcus lactis   Taxonomy   Expression System: Escherichia coli  
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name Interactions
    GOL
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    Download      		GOL C3 H8 O3
    GLYCEROL
    ZN
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    Download      		ZN Zn
    ZINC ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    SOS
    Search      		SOS C18 H24 N5 O7 P dnaLinking
     
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  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PD1092
     
 
Data in orange boxes are gathered from external resources (when available).
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  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Coste, F.,  Castaing, B.,  Carell, T.

    Deposition:   2008-01-31
    Release:   2008-12-16
    Last Modified (REVDAT):   2011-07-13
     
  •   Revision History    Hide
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    2011-07-13
    Non-polymer description
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.90
    R-Value: 0.173 (obs.)
    R-Free: 0.200
    Space Group: P 41 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 91.36 α = 90.00 
    b = 91.36 β = 90.00 
    c = 140.94 γ = 90.00