3BG5

Crystal Structure of Staphylococcus Aureus Pyruvate Carboxylase

Structural Biology Knowledgebase: 3BG5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.215

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3BG5

Classification: LIGASE

Total Structure Weight: 527175.61

Macromolecule Entities
Molecule Chains Length Organism Details
Pyruvate carboxylase A, B, C, D 1173 Staphylococcus aureus

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ATP
Query on ATP

A, C ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
Ligand Explorer
 
JSmol
BTI
Query on BTI

A, B, C, D 5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL- 6-YL)PENTANAL
C10 H16 N2 O2 S
ARDNWGMSCXSPBF-CIUDSAMLSA-N
Ligand Explorer
 
JSmol
MN
Query on MN

A, B, C, D MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
PYR
Query on PYR

A, B, C, D PYRUVIC ACID
C3 H4 O3
LCTONWCANYUPML-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.215
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 96.43 α = 90.00
b = 256.08 β = 109.47
c = 126.01 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-11-26
  • Released Date: 2008-02-26
  • Deposition author(s): Xiang, S., Tong, L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4