3A38

Crystal structure of high-potential iron-sulfur protein from Thermochromatium tepidum at 0.7 angstrom resolution

Structural Biology Knowledgebase: 3A38 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.7 Å
  • R-Value Free: 0.074
  • R-Value Work: 0.066

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3A38

Classification: ELECTRON TRANSPORT

Total Structure Weight: 9525.82

Macromolecule Entities
Molecule Chains Length Organism Details
High-potential iron-sulfur protein A 83 Thermochromatium tepidum Gene Name(s): hip

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SF4
Query on SF4

A IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-VKOJMFJBAC
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.7 Å
  • R-Value Free: 0.074
  • R-Value Work: 0.066
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 46.51 α = 90.00
b = 58.96 β = 90.00
c = 23.42 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-06-10
  • Released Date: 2010-01-26
  • Deposition author(s): Takeda, K., Kusumoto, K., Hirano, Y., Miki, K.

Revision History

  • 2014-03-05
    Type: Citation | Details: Citation update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4