3ZRK

Identification of 2-(4-pyridyl)thienopyridinones as GSK-3beta inhibitors

Structural Biology Knowledgebase: 3ZRK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.37 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.198

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3ZRK

Classification: TRANSFERASE / PEPTIDE

Total Structure Weight: 92895.08

Macromolecule Entities
Molecule Chains Length Organism Details
GLYCOGEN SYNTHASE KINASE-3 BETA A, B 371 Homo sapiens EC#: 2.7.11.26 IUBMB
Fragment: RESIDUES 23-393
Gene Name(s): GSK3B Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTO-ONCOGENE FRAT1 X, Y 32 Homo sapiens Fragment: RESIDUES 197-226
Details: FRATTIDE SEQUENCE CO-EXPRESSED IN BACULOVIRUS (DUAL EXPRESSION).
Gene Name(s): FRAT1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZRK
Query on ZRK

A, B 2-(4-PYRIDINYL)FURO[3,2-C]PYRIDIN-4(5H)-ONE
C12 H8 N2 O2
NLYCKXUGHPVKMO-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
ZRK IC50: 125.89 nM (100) BindingDB

IC50: 130 nM  BindingMOAD
IC50: 130 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
PTR
Query on PTR
A, B L-PEPTIDE LINKING C9 H12 N O6 P TYR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.37 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.198
  • Space Group: H 3 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 151.90 α = 90.00
b = 151.90 β = 90.00
c = 201.12 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-06-16
  • Released Date: 2011-06-29
  • Deposition author(s): Gentile, G., Bernasconi, G., Pozzan, A., Merlo, G., Marzorati, P., Bamborough, P., Bax, B., Bridges, A., Brough, C., Carter, P., Cutler, G., Neu, M., Takada, M.

Revision History

  • 2012-04-25
    Type: Version format compliance | Details: REMARK 4
  • 2012-04-25
    Type: Citation | Details: JRNL