3ZNU

Crystal structure of ClcF in crystal form 2

Structural Biology Knowledgebase: 3ZNU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.157

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3ZNU

Classification: LYASE

Total Structure Weight: 113980.68

Macromolecule Entities
Molecule Chains Length Organism Details
5-CHLOROMUCONOLACTONE DEHALOGENASE A, B, C..., D, E, F, G, H, I, JA, B, C, D, E, F, G, H, I, J 94 Rhodococcus opacus EC#: 5.3.3.4 IUBMB
Gene Name(s): clcF

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A, B, C, D, E, F, G, H, I, J 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B, C, D, E, F, G, H, I, J CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

D, H MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.157
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 78.24 α = 90.00
b = 103.57 β = 90.00
c = 141.67 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-02-18
  • Released Date: 2013-02-27
  • Deposition author(s): Roth, C., Groening, J.A.D., Kaschabek, S.R., Schloemann, M., Straeter, N.

Revision History

  • 2013-04-24
    Type: Citation | Details: JRNL
  • 2013-03-20
    Type: Atom nomenclature | Details: ATOM
  • 2013-03-20
    Type: Other | Details: ANISOU
  • 2013-03-13
    Type: Citation | Details: JRNL