Structure of AfC3PO - duplex RNA complex
DOI:10.2210/pdb3zc0/pdb   NDB ID: NA2206
3ZC0
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase/rna
    Structure Weight: 289253.90
    Molecule: AFTRAX
    Polymer: 1 Type: protein Length: 199
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    Mutation: YES
    Organism: Archaeoglobus fulgidus
    Gene Name: AF_2260
    UniProtKB: Protein Feature View | Search PDB | O28024  
    Molecule: 5'-R(*UP*UP*CP*GP*AP*CP*GP*CP*GP*UP*CP*GP*AP*AP*UP*U)-3'
    Polymer: 2 Type: rna Length: 16
    Chains: M, N, O
    Organism: synthetic construct
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Archaeoglobus fulgidus   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    3ZC1   CRYSTAL STRUCTURE OF AFC3PO 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CL
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    CL Cl
    CHLORIDE ION
    MG
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    MG Mg
    MAGNESIUM ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA2206
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Parizotto, E.A.,  Lowe, E.D.,  Parker, J.S.

    Deposition:   2012-11-14
    Release:   2013-01-23
    Last Modified (REVDAT):   2013-03-20
     
  •   Revision History    Hide
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    2013-03-20
    Citation
    2013-02-27
    Citation
    2013-01-30
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.98
    R-Value: 0.210 (obs.)
    R-Free: 0.257
    Space Group: P 31 2 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 183.06 α = 90.00 
    b = 183.06 β = 90.00 
    c = 198.12 γ = 120.00