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Crystal Structure of Human Nucleosome Core Particle lacking H4 N-terminal region
DOI:10.2210/pdb3w99/pdb   NDB ID: NA2362
3W99
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Structural Protein/dna
    Structure Weight: 199742.33
    Molecule: Histone H3.1
    Polymer: 1 Type: protein Length: 139
    Chains: A, E
    Organism Homo sapiens
    Gene Names HIST1H3A H3FA HIST1H3B H3FL HIST1H3C H3FC HIST1H3D H3FB HIST1H3E H3FD HIST1H3F H3FI HIST1H3G H3FH HIST1H3H H3FK HIST1H3I H3FF HIST1H3J H3FJ
    UniProtKB:   Protein Feature View | Search PDB | P68431  
    Molecule: Histone H4
    Polymer: 2 Type: protein Length: 91
    Chains: B, F
    Fragment: UNP residues 17-103
    Organism Homo sapiens
    Gene Names HIST1H4A H4/A H4FA HIST1H4B H4/I H4FI HIST1H4C H4/G H4FG HIST1H4D H4/B H4FB HIST1H4E H4/J H4FJ HIST1H4F H4/C H4FC HIST1H4H H4/H H4FH HIST1H4I H4/M H4FM HIST1H4J H4/E H4FE HIST1H4K H4/D H4FD HIST1H4L H4/K H4FK HIST2H4A H4/N H4F2 H4FN HIST2H4 HIST2H4B H4/O H4FO HIST4H4
    UniProtKB:   Protein Feature View | Search PDB | P62805  
    Molecule: Histone H2A type 1-B/E
    Polymer: 3 Type: protein Length: 133
    Chains: C, G
    Organism Homo sapiens
    Gene Names HIST1H2AB H2AFM HIST1H2AE H2AFA
    UniProtKB:   Protein Feature View | Search PDB | P04908  
    Molecule: Histone H2B type 1-J
    Polymer: 4 Type: protein Length: 129
    Chains: D, H
    Organism Homo sapiens
    Gene Names HIST1H2BJ H2BFR
    UniProtKB:   Protein Feature View | Search PDB | P06899  
    Molecule: 146-mer DNA
    Polymer: 5 Type: dna Length: 146
    Chains: I, J
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 3
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 4
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 5
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    3AFA  Intact human nucleosome core particle 
    3W96  Human Nucleosome Core Particle lacking H2A N-terminal region 
    3W97  Human Nucleosome Core Particle lacking H2B N-terminal region 
    3W98  Human Nucleosome Core Particle lacking H3.1 N-terminal region 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    MN
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    MN Mn
    MANGANESE (II) ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA2362
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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