3VY9

Crystal structure of PorB from Neisseria meningitidis in complex with cesium ion, space group H32

Structural Biology Knowledgebase: 3VY9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.63 Å
  • R-Value Free: 0.281
  • R-Value Work: 0.235

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VY9

Classification: MEMBRANE PROTEIN

Total Structure Weight: 38711.32

Macromolecule Entities
Molecule Chains Length Organism Details
Outer membrane protein X 355 Neisseria meningitidis

Membrane Protein

Source: inferred by homology | Group: BETA-BARREL

Subgroup Name: Beta-Barrel Membrane Proteins: Porins and Relatives

Protein Name: PorB outer membrane protein, native structure


Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CS
Query on CS

X CESIUM ION
Cs
NCMHKCKGHRPLCM-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.63 Å
  • R-Value Free: 0.281
  • R-Value Work: 0.235
  • Space Group: H 3 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 144.21 α = 90.00
b = 144.21 β = 90.00
c = 106.41 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-09-21
  • Released Date: 2013-01-02
  • Deposition author(s): Kattner, C., Zaucha, J., Jaenecke, F., Zachariae, U., Tanabe, M.

Revision History

  • 2013-10-09
    Type: Citation | Details: Citation update