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Crystal structures of rat VDR-LBD with R270L mutation
3VT3
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  •   Molecular Description Hide
    Classification: Hormone Receptor
    Structure Weight: 32692.86
    Molecule: Vitamin D3 receptor
    Polymer: 1 Type: protein Length: 271
    Chains: A
    Fragment: UNP RESIDUES 116-423
    Mutation: R270L
    Organism: Rattus norvegicus
    Gene Names: Vdr Nr1i1
    UniProtKB: Protein Feature View | Search PDB | P13053  
    Molecule: COACTIVATOR PEPTIDE DRIP
    Polymer: 2 Type: protein Length: 13
    Chains: C
     
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  • MolProbity Ramachandran Plot
     

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  •   Source Hide
    Polymer: 1
    Scientific Name: Rattus norvegicus   Taxonomy   Common Name: Rats Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    2ZLC   
    3VT4   
    3VT5   
    3VT6   
    3VT7   
    3VT8   
    3VT9   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    EDO
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    EDO C2 H6 O2
    1,2-ETHANEDIOL
    FMT
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    FMT C H2 O2
    FORMIC ACID
    VDX
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    VDX C27 H44 O3
    5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A- METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}- 4-METHYLENE-CYCLOHEXANE-1,3-DIOL
    VDX:3VT3
     
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  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Nakabayashi, M.,  Shimizu, M.,  Ikura, T.,  Ito, N.

    Deposition:   2012-05-19
    Release:   2013-05-22
    Last Modified (REVDAT):   2014-02-12
     
  •   Revision History    Hide
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    2014-02-12
    Citation
    2013-09-11
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.70
    R-Value: 0.202 (obs.)
    R-Free: 0.241
    Space Group: C 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 153.88 α = 90.00 
    b = 41.63 β = 96.31 
    c = 41.96 γ = 90.00