3VT2

Crystal structure of Ct1,3Gal43A in complex with isopropy-beta-D-thiogalactoside

Structural Biology Knowledgebase: 3VT2 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.245

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VT2

Classification: SUGAR BINDING PROTEIN

Total Structure Weight: 354036.28

Macromolecule Entities
Molecule Chains Length Organism Details
Ricin B lectin A, B, C..., D, E, FA, B, C, D, E, F 526 Ruminiclostridium thermocellum Fragment: UNP residues 31-520
Gene Name(s): Cthe_0661
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IPT
Query on IPT

A, B, C, D, E, F ISOPROPYL-1-BETA-D-THIOGALACTOSIDE
1-(ISOPROPYLTHIO)-BETA-GALACTOPYRANSIDE (Synonym)
C9 H18 O5 S
BPHPUYQFMNQIOC-NXRLNHOXSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B, C, E, F GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.245
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 107.23 α = 90.00
b = 121.97 β = 90.00
c = 405.21 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-05-18
  • Released Date: 2012-12-05
  • Deposition author(s): Jiang, D., Fan, J., Wang, X., Zhao, Y., Huang, B., Zhang, X.C.

Revision History

No revisions since initial release