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Crystal structure of native 1,6-APD (2-Animophenol-1,6-dioxygenase) complex with 4-Nitrocatechol
3VSI
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Oxidoreductase/oxidoreductase Inhibitor
    Structure Weight: 129185.32
    Molecule: 2-amino-5-chlorophenol 1,6-dioxygenase alpha subunit
    Polymer: 1 Type: protein Length: 271
    Chains: A, C
    EC#: 1.13.11.8   
    Organism: Comamonas testosteroni CNB-1
    Gene Names: cnbCa amnA
    UniProtKB: Protein Feature View | Search PDB | Q6J1Z5  
    Molecule: 2-amino-5-chlorophenol 1,6-dioxygenase beta subunit
    Polymer: 2 Type: protein Length: 312
    Chains: B, D
    EC#: 1.13.11.74    1.13.11.76   
    Organism: Comamonas testosteroni CNB-1
    Gene Names: cnbCb amnB
    UniProtKB: Protein Feature View | Search PDB | Q6J1Z6  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Comamonas testosteroni   Taxonomy    
    Polymer: 2
    Scientific Name: Comamonas testosteroni   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    3VSG   
    3VSH   
    3VSJ   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    4NC
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    4NC C6 H5 N O4
    4-NITROCATECHOL
    4NC:3VSI
    FE
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    FE Fe
    FE (III) ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Li, D.F.,  Hou, Y.J.,  Hu, Y.,  Wang, D.C.,  Liu, W.

    Deposition:   2012-04-25
    Release:   2013-01-16
     
  •   Revision History    Hide
    No revisions since initial release
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.50
    R-Value: 0.208 (obs.)
    R-Free: 0.270
    Space Group: C 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 272.73 α = 90.00 
    b = 48.26 β = 109.61 
    c = 108.12 γ = 90.00